View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13764_low_58 (Length: 249)
Name: NF13764_low_58
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_58 |
 | |
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| [»] scaffold0006 (1 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 13523526 - 13523342
Alignment:
| Q |
1 |
gaggcttaaatgcaacattgacgcagctttttctgagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13523526 |
gaggcttaaatgcaacattgacgcagcttttcc-gagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggct |
13523428 |
T |
|
| Q |
101 |
agaacggactgtttcagccctatgtgtgaagtatatgttggagaagctttaggtcttttatctgctatggattgggttcatttgtt |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13523427 |
agaacggactgtttcagccctatgtgtgaagtacatgttggagaagctttaggtcttttatctgctatggattgggttcatttgtt |
13523342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 13613061 - 13612877
Alignment:
| Q |
1 |
gaggcttaaatgcaacattgacgcagctttttctgagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13613061 |
gaggcttaaatgcaacattgacgcagcttttcc-gagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggct |
13612963 |
T |
|
| Q |
101 |
agaacggactgtttcagccctatgtgtgaagtatatgttggagaagctttaggtcttttatctgctatggattgggttcatttgtt |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13612962 |
agaacggactgtttcagccctatgtgtgaagtacatgttggagaagctttaggtcttttatctgctatggattgggttcatttgtt |
13612877 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 22849207 - 22849392
Alignment:
| Q |
1 |
gaggcttaaatgcaacattgacgcagctttttctgagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggct |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22849207 |
gaggtttaaatgcaacattgacgcagctttttccgagacggagaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggct |
22849306 |
T |
|
| Q |
101 |
agaacggactgtttcagccctatgtgtgaagtatatgttggagaagctttaggtcttttatctgctatggattgggttcatttgtt |
186 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22849307 |
agaacgtactgtttcagccctatgtgtgaagtacatgttggagaagctttaggtcttttatctgctatggattgggttcatttgtt |
22849392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 33846058 - 33845976
Alignment:
| Q |
11 |
tgcaacattgacgcagctttttctgagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgt |
93 |
Q |
| |
|
||||| ||||| || ||||||||||||||| | ||| ||||||| |||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
33846058 |
tgcaatattgatgcggctttttctgagacgactaatttggttggcatagggatgtgcattagagatgaggacggtcattttgt |
33845976 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 24177391 - 24177576
Alignment:
| Q |
1 |
gaggcttaaatgcaacattgacgcagctttttctgagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggct |
100 |
Q |
| |
|
|||| ||||||| || ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24177391 |
gaggtttaaatgtaatattgacgcagctttttccgagacggcgaatctggttggagtagggatgtgcattagagatgagaacggtcactttgtgttggct |
24177490 |
T |
|
| Q |
101 |
agaacggactgtttcagccctatgtgtgaagtatatgttggagaagctttaggtcttttatctgctatggattgggttcatttgtt |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24177491 |
agaacggactgtttcagccctatgtgtgaagtacatgttggagaagctttaggtcttttatctgctatggattgggttcatttgtt |
24177576 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 32096860 - 32096977
Alignment:
| Q |
48 |
tggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggctagaacggactgtttcagccctatgtgtgaagtatatgttggagaagc |
147 |
Q |
| |
|
||||||||||||||||||| || ||||| || | ||| ||||| ||||| | ||| || || |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
32096860 |
tggttggaatagggatgtgtataagagacgaacatggtacttttgttttggccaaaacagaatgcttcagccccatgtgtgaagttcatgttggagaagc |
32096959 |
T |
|
| Q |
148 |
tttaggtcttttatctgc |
165 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
32096960 |
tttaggatttttatctgc |
32096977 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 184
Target Start/End: Complemental strand, 5954329 - 5954189
Alignment:
| Q |
44 |
aatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggctagaacggactgtttcagccctatgtgtgaagtatatgttggag |
143 |
Q |
| |
|
||||| ||||| || || ||||| ||||||||||| || || || ||||| | |||||||| |||| |||||||| || |||||||| || || ||| |
|
|
| T |
5954329 |
aatctagttggcatcggaatgtgtattagagatgaaaatggacattttgtacttgctagaacagactacttcagccccatttgtgaagtccatattagag |
5954230 |
T |
|
| Q |
144 |
aagctttaggtcttttatctgctatggattgggttcatttg |
184 |
Q |
| |
|
|||| || || ||||||||||||||||| |||| ||||||| |
|
|
| T |
5954229 |
aagcgttgggacttttatctgctatggactgggctcatttg |
5954189 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 203562 - 203377
Alignment:
| Q |
1 |
gaggcttaaatgcaacattgacgcagctttttctgagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggct |
100 |
Q |
| |
|
|||| ||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
203562 |
gaggtttaaatgtaatattgacgcagctttttccgagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttagct |
203463 |
T |
|
| Q |
101 |
agaacggactgtttcagccctatgtgtgaagtatatgttggagaagctttaggtcttttatctgctatggattgggttcatttgtt |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
203462 |
agaacggactgtttcagccctatgtgtgaagtacatgttggagaagctttaggtcttttatctgttatggattgggttcatttgtt |
203377 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 54781533 - 54781718
Alignment:
| Q |
1 |
gaggcttaaatgcaacattgacgcagctttttctgagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggct |
100 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54781533 |
gaggtttaaatgtaacattgacgcagctttttctgagacggtgaatctggttggcatagggatgtgcattagagatgagaacggtcactttgtgttggct |
54781632 |
T |
|
| Q |
101 |
agaacggactgtttcagccctatgtgtgaagtatatgttggagaagctttaggtcttttatctgctatggattgggttcatttgtt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
54781633 |
agaacggactgtttcagccctatgtgtgaattacatgttggagaagctttaggccttttatctgctatggattgggttcatttgtt |
54781718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 48213193 - 48213366
Alignment:
| Q |
11 |
tgcaacattgacgcagctttttctgagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggctagaacggact |
110 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| ||||||| ||||| | |||| |||||| | |
|
|
| T |
48213193 |
tgcaatattgatgcggctttttctgagacggctaatttggttggcatagggatgtgcattagagatgaggacggtcattttgtacttgctaaaacggatt |
48213292 |
T |
|
| Q |
111 |
gtttcagccctatgtgtgaagtatatgttggagaagctttaggtcttttatctgctatggattgggttcatttg |
184 |
Q |
| |
|
||||| |||| |||||||| || | |||||||| | ||||| ||||||| | |||||||||| |||||| |
|
|
| T |
48213293 |
acttcagtcctacttgtgaagtccatataggagaagcgcttggtctgttatctgttgtggattgggtgcatttg |
48213366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 46388267 - 46388202
Alignment:
| Q |
11 |
tgcaacattgacgcagctttttctgagacggcgaatctggttggaatagggatgtgcattagagat |
76 |
Q |
| |
|
||||| ||||| || ||||||| ||||| ||| ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
46388267 |
tgcaatattgatgcggctttttttgagatggctaatttggttggcatagggatgtgcattagagat |
46388202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 21504696 - 21504881
Alignment:
| Q |
1 |
gaggcttaaatgcaacattgacgcagctttttctgagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggct |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21504696 |
gaggtttaaatgcaacattgacgcagctttttccgagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttgggt |
21504795 |
T |
|
| Q |
101 |
agaacggactgtttcagccctatgtgtgaagtatatgttggagaagctttaggtcttttatctgctatggattgggttcatttgtt |
186 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
21504796 |
agaacagactgtttcaaccctatgtgtgaagtacatgttggagaagctttaggtcttttatcttctctggattgggttcatttgtt |
21504881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 13503001 - 13503186
Alignment:
| Q |
1 |
gaggcttaaatgcaacattgacgcagctttttctgagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggct |
100 |
Q |
| |
|
|||| ||||||| || |||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13503001 |
gaggtttaaatgtaatattgacgcagatttttccaagacggcgaatctggttggagtagggatgtgcattagagatgagaacggtcactttgtgttggct |
13503100 |
T |
|
| Q |
101 |
agaacggactgtttcagccctatgtgtgaagtatatgttggagaagctttaggtcttttatctgctatggattgggttcatttgtt |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13503101 |
agaacggactgtttcagccctatgtgtgaagtacatgttggagaagctttaggtcttttatctgctatggattgggttcatttgtt |
13503186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 5733 - 5560
Alignment:
| Q |
11 |
tgcaacattgacgcagctttttctgagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggctagaacggact |
110 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| | ||||| ||||| || |||| ||| || | |
|
|
| T |
5733 |
tgcaatattgatgcggctttttctgagacggctaatttggttggcatagggatgtgcattagagatgaggatggtcattttgtatttgctaaaacagatt |
5634 |
T |
|
| Q |
111 |
gtttcagccctatgtgtgaagtatatgttggagaagctttaggtcttttatctgctatggattgggttcatttg |
184 |
Q |
| |
|
||||| |||| |||||||| || | ||||||| | ||||| || ||||||||||||||||| |||||| |
|
|
| T |
5633 |
acttcagtcctacttgtgaagtccatataggagaagtgcttggtctgttctctgctatggattgggtgcatttg |
5560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 21708177 - 21708350
Alignment:
| Q |
11 |
tgcaacattgacgcagctttttctgagacggcgaatctggttggaatagggatgtgcattagagatgagaacggtcactttgtgttggctagaacggact |
110 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| | ||||| ||||| || |||| ||| || | |
|
|
| T |
21708177 |
tgcaatattgatgcggctttttctgagacggctaatttggttggcatagggatgtgcattagagatgaggatggtcattttgtatttgctaaaacagatt |
21708276 |
T |
|
| Q |
111 |
gtttcagccctatgtgtgaagtatatgttggagaagctttaggtcttttatctgctatggattgggttcatttg |
184 |
Q |
| |
|
||||| |||| |||||||| || | ||||||| | ||||| || ||||||||||||||||| |||||| |
|
|
| T |
21708277 |
acttcagtcctacttgtgaagtccatataggagaagtgcttggtctgttctctgctatggattgggtgcatttg |
21708350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 10768 - 10805
Alignment:
| Q |
56 |
atagggatgtgcattagagatgagaacggtcactttgt |
93 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
10768 |
atagggatgtgcattagagatgaggacggtcattttgt |
10805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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