View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13764_low_59 (Length: 245)
Name: NF13764_low_59
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_59 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 34662868 - 34662717
Alignment:
| Q |
19 |
gttatagtactggatgattgacctgaggcacccggcgtctccctttcgtgaagatcactagcactttgttttatgtaaaggcttaagtttgttgatagat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34662868 |
gttatagtactggatgattgacctgaggcacccggcgtctccctttcgtgaagatcactagcactttgttttatgtaaaggcttaagtttgttgatagat |
34662769 |
T |
|
| Q |
119 |
ttgcggaaaggaaagatcatgtgctcattgagatgcaacacaattgtgcaat |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34662768 |
ttgcggaaaggaaagatcatgtgctcattgagatgcaacacaattgtgcaat |
34662717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 34662685 - 34662612
Alignment:
| Q |
172 |
gttctgtttataattcaaagttgtatatctttatgggtgatcttgacatagggaaatactatagatggcttacc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34662685 |
gttctgtttataattcaaagttgtatatctttatgggtgatcttgacatagggaaatactatagatggcttacc |
34662612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 26956744 - 26956593
Alignment:
| Q |
19 |
gttatagtactggatgattgacctgaggcacccggcgtctccctttcgtgaagatcactagcactttgttttatgtaaaggcttaagtttgttgatagat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26956744 |
gttatagtactggatgattgacctgaggcacccggcgtctccctttcgtgaagatcactagcactttgttttatgtaaaggcttaagtttgttgatagat |
26956645 |
T |
|
| Q |
119 |
ttgcggaaaggaaagatcatgtgctcattgagatgcaacacaattgtgcaat |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26956644 |
ttgcggaaaggaaagatcatgtgctcattgagatgcaacacaattgtgcaat |
26956593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 26956557 - 26956505
Alignment:
| Q |
176 |
tgtttataattcaaagttgtatatctttatgggtgatcttgacatagggaaat |
228 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26956557 |
tgtttataattcaaagttgtatatcttcatgggtgatcttgacatagggaaat |
26956505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 26839036 - 26838973
Alignment:
| Q |
180 |
tataattcaaagttgtatatctttatgggtgatc-ttgacatagggaaatactatagatggctt |
242 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| |||| ||||| |||||||||||||||||| |
|
|
| T |
26839036 |
tataattcaaagttgtatatttatatgggtgatcattgaaataggaaaatactatagatggctt |
26838973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 26839228 - 26839133
Alignment:
| Q |
19 |
gttatagtactggatgattgacctgaggcacccggcgtctccctttcgtgaagatcactagcacttt---gttttatgtaaaggcttaagtttgttg |
112 |
Q |
| |
|
||||||| ||||||||||||||| |||||| | | | | ||||||| |||||||||| |||||||| |||||| |||||||||||||||||||| |
|
|
| T |
26839228 |
gttatagaactggatgattgacccgaggcatcagtctt-tcccttttttgaagatcacaagcacttttttgttttaggtaaaggcttaagtttgttg |
26839133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University