View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_low_60 (Length: 243)
Name: NF13764_low_60
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_60 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 32958348 - 32958553
Alignment:
| Q |
21 |
catcaacggtgagaattgacaagagattgttgcggaacttgttaatgaagtatatgttttcaaataaaattaagaaccatgatttgaaaacgaattcaaa |
120 |
Q |
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| T |
32958348 |
catcaacggtaagaattgacaagagattgttgcagaacatgttaatgaagtatatgttttcgaataaaattaagaaccatgatttgcaaacgaattcaaa |
32958447 |
T |
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| Q |
121 |
acgcatgaaagatttaagatgaagatcagagaaggcaatatcatcatatttatatagttgttgttcgccttttcttttgagagaatgaagttcagcggtt |
220 |
Q |
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| T |
32958448 |
acgcatgaaagatttaagatgaagatcagagaaggcaatatcatcatatatatatagttgttgttcgccttttcttttgagagaatgaagttcagcggtt |
32958547 |
T |
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| Q |
221 |
gcagat |
226 |
Q |
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|||||| |
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| T |
32958548 |
gcagat |
32958553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 38630 - 38504
Alignment:
| Q |
98 |
catgatttgaaaacgaattcaaaacgcatgaaagatttaagatgaagatcagagaaggcaatatcatcatatttatatagttgttgttcgccttttcttt |
197 |
Q |
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||||||||| ||| | ||||||||||| |||||||||||||||| |||| ||||||||||||||||| || | ||||| |||||||| |||||| || |
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| T |
38630 |
catgatttgcaaatggattcaaaacgcttgaaagatttaagatgcagattggagaaggcaatatcatc--atgtctatagctgttgttcacctttttgtt |
38533 |
T |
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| Q |
198 |
tgagagaatgaagttcagcggttgcagat |
226 |
Q |
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| T |
38532 |
tgagagaatgaagttcagcggttgcagat |
38504 |
T |
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