View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13764_low_68 (Length: 209)
Name: NF13764_low_68
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_68 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 34 - 194
Target Start/End: Complemental strand, 1747141 - 1746981
Alignment:
| Q |
34 |
gtatttgattattactctatgcaccataatttcctagtaatcttgtatgttaagatttttatataatgtgcaatataatgcaattagttatgtgttatac |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1747141 |
gtatttgattattactctatgcaccataatttcctagtaatcttgtatggtaagatttttatataaggtgcaatataatgcaattagttatgtgttatac |
1747042 |
T |
|
| Q |
134 |
aaagttataaattacattgtttttctttgctttcccttgaattgtatcatctggatttgat |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1747041 |
aaagttataaattacattgtttttctttgctttcccttgaattgtatcatctggatttgat |
1746981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University