View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13764_low_7 (Length: 594)
Name: NF13764_low_7
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 81 - 579
Target Start/End: Original strand, 38389467 - 38389977
Alignment:
| Q |
81 |
gggttttgtatgcctcgagagaaaagttgtggcagattttctacaacaagtaagtatataacattatgatcttatttcta--catggttagaatataatg |
178 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38389467 |
gggttttgtatgccttgagagaaaagttgtggcagattttctacaacaagtaagtatataacattatgatcttatttctatacatggttagaatataatg |
38389566 |
T |
|
| Q |
179 |
agttttaatagtttaatttttggttattaattattatgtggtattgtttgttggtcacatcaatgaaagatcaggagcaatt----ttgggcagaaaatg |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
38389567 |
agttttaatagtttaatttttggttattaattattatgtggtattgtttgttggtcacatcaatgaaagatcaggagcaattaattttgggcggaaaatg |
38389666 |
T |
|
| Q |
275 |
aaaaatattataggtatgtgacacctaatgagcttgcaagaggcattttagcttactgatgttggaataagctttgctaatgaatttgctacctagttag |
374 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38389667 |
aaaaatcttataggtatgtgacacctaaagagtttgca-gaggcattttagcttactgatgttggaataagctttgctaatgaatttgctacctagttag |
38389765 |
T |
|
| Q |
375 |
aaaaatctataagtttgaagatatagtaaaaccacatgagtaatggatttgcatgaattattagtagttacttaaattgaaaaaccacattgttcagacc |
474 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38389766 |
aaaaatctaaaagttagaagatatagtaaaaccacatgagcaatggatttttatgaattattagtagttacttaaattgaaaaaccacattgttcagacc |
38389865 |
T |
|
| Q |
475 |
tacatgacaaagttacaagatatagtaaaatgaattgcgc-------atatgtattctcttgatacgcatcttttgatcgattccgtatttattggttgc |
567 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
38389866 |
tacatgacaaagttagaagatatagtaaaatgaattgcgcttcatgagtatgtattctcttgatacgtatcttttgatcgattccatatttattggttgc |
38389965 |
T |
|
| Q |
568 |
caaggcagctgg |
579 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38389966 |
caaggcagctgg |
38389977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 407 - 511
Target Start/End: Complemental strand, 38391275 - 38391171
Alignment:
| Q |
407 |
cacatgagtaatggatttgcatgaattattagtagttacttaaattgaaaaaccacattgttcagacctacatgacaaagttacaagatatagtaaaatg |
506 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
38391275 |
cacatgagtaatggatttgtatgaattattagtagttacttaaattgaaaaactacattattcaaacctacatgacaaagtttgaagatatagtaaaatg |
38391176 |
T |
|
| Q |
507 |
aattg |
511 |
Q |
| |
|
||||| |
|
|
| T |
38391175 |
aattg |
38391171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 161 - 288
Target Start/End: Original strand, 38390913 - 38391032
Alignment:
| Q |
161 |
catggttagaatataatgagttttaatagtttaatttttggttattaattattatgtggtattgtttgttggtcacatcaatgaaagatcaggagcaatt |
260 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||| |||| |
|
|
| T |
38390913 |
catggttagaacataatgagttttaatagtttaattttttgttatta----ttatgtggtattgta----ggtcaaatcaatgaaagatcaggaacaata |
38391004 |
T |
|
| Q |
261 |
ttgggcagaaaatgaaaaatattatagg |
288 |
Q |
| |
|
|||||| |||||||||||| ||||||| |
|
|
| T |
38391005 |
ttgggcggaaaatgaaaaaccttatagg |
38391032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 137 - 301
Target Start/End: Complemental strand, 38390226 - 38390070
Alignment:
| Q |
137 |
tataacattatgatcttatttctacatggttagaatataatgagttttaatagtttaatttttggttattaattattatgtggtattgtttgttggtcac |
236 |
Q |
| |
|
|||||| |||||||||| ||| |||||| |||||| |||||||||||||||||||| ||||||||||||||| ||||||||| |||| |||| |
|
|
| T |
38390226 |
tataacgttatgatcttctttttacatgattagaagataatgagttttaatagtttcatttttggttattaa----tatgtggta----ttgtaactcac |
38390135 |
T |
|
| Q |
237 |
atcaatgaaagatcaggagcaattttgggcagaaaatgaaaaatattataggtatgtgacaccta |
301 |
Q |
| |
|
|| ||| |||||||||||||||| ||| || | |||||||||| ||||| || | ||||||||| |
|
|
| T |
38390134 |
attaataaaagatcaggagcaatattgagcggtaaatgaaaaaccttatatgtttttgacaccta |
38390070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 38389387 - 38389440
Alignment:
| Q |
10 |
attatactctcttgagggacatattgtgtacacagtctgtgtgagcatgtgcttg |
64 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38389387 |
attatactctct-gagggacatattgtgtacacagtctgtgtgagcatgtgcttg |
38389440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University