View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_low_71 (Length: 202)
Name: NF13764_low_71
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 13202533 - 13202699
Alignment:
| Q |
20 |
tagaggtctctgcatcagccacattttaccgcagtataaaggttcgcagcataatcacaaatgcgatcccagttaaaactatgggaaaataaaagcagaa |
119 |
Q |
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| T |
13202533 |
tagaggtctctgcatcagccacattttaccgcagtataaaggttcgcagcataatcacaaatgcgatcccatttaaaactatgggaaaataaaagcagaa |
13202632 |
T |
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| Q |
120 |
acaaaggcatttacccagtcatgagttcctcgagcttccttcagcccatatgttaggcccgagtata |
186 |
Q |
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| T |
13202633 |
acaaaggcatttacccagtcatgagctcctcgagcttccttcagcccatatgttaggccggagtata |
13202699 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 50326097 - 50326055
Alignment:
| Q |
130 |
ttacccagtcatgagttcctcgagcttccttcagcccatatgt |
172 |
Q |
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| T |
50326097 |
ttacccagtcatgagtaccacgagcttccttcatcccatatgt |
50326055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 11358274 - 11358234
Alignment:
| Q |
33 |
atcagccacattttaccgcagtataaaggttcgcagcataa |
73 |
Q |
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| T |
11358274 |
atcagccacatttttccgcaatataaaggctcgcagcataa |
11358234 |
T |
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