View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13764_low_9 (Length: 580)

Name: NF13764_low_9
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13764_low_9
NF13764_low_9
[»] chr1 (12 HSPs)
chr1 (17-579)||(35999317-35999885)
chr1 (521-572)||(12707875-12707926)
chr1 (521-572)||(12713329-12713380)
chr1 (521-572)||(12717420-12717471)
chr1 (522-574)||(13436465-13436517)
chr1 (523-574)||(21530697-21530748)
chr1 (523-574)||(39130767-39130818)
chr1 (523-574)||(52903257-52903308)
chr1 (527-573)||(2784568-2784614)
chr1 (521-574)||(14332642-14332695)
chr1 (522-574)||(6427357-6427409)
chr1 (522-574)||(34371721-34371772)
[»] chr5 (10 HSPs)
chr5 (514-573)||(28862304-28862363)
chr5 (522-574)||(39205887-39205939)
chr5 (500-562)||(12927639-12927701)
chr5 (522-572)||(23012410-23012460)
chr5 (522-564)||(31682041-31682082)
chr5 (513-574)||(33178023-33178084)
chr5 (533-566)||(36577684-36577717)
chr5 (522-574)||(6471889-6471941)
chr5 (522-574)||(16203795-16203847)
chr5 (522-574)||(36838550-36838602)
[»] chr4 (6 HSPs)
chr4 (496-562)||(21539879-21539945)
chr4 (516-564)||(49652982-49653030)
chr4 (522-572)||(5832696-5832746)
chr4 (533-574)||(7970537-7970578)
chr4 (525-566)||(13134460-13134501)
chr4 (522-566)||(999356-999400)
[»] chr7 (13 HSPs)
chr7 (522-574)||(3721100-3721152)
chr7 (500-572)||(5233614-5233686)
chr7 (522-570)||(8160423-8160471)
chr7 (518-574)||(35297672-35297728)
chr7 (533-572)||(33384584-33384623)
chr7 (521-574)||(7758328-7758381)
chr7 (495-572)||(15902802-15902879)
chr7 (533-574)||(18213033-18213074)
chr7 (535-576)||(18226964-18227005)
chr7 (523-572)||(23849460-23849509)
chr7 (522-562)||(5235993-5236033)
chr7 (522-574)||(7328691-7328743)
chr7 (501-573)||(11061077-11061149)
[»] chr3 (12 HSPs)
chr3 (495-574)||(28678283-28678362)
chr3 (523-576)||(7614413-7614466)
chr3 (522-574)||(11313800-11313852)
chr3 (494-566)||(29508423-29508495)
chr3 (535-574)||(15314876-15314915)
chr3 (523-574)||(16789020-16789071)
chr3 (484-574)||(25948887-25948977)
chr3 (533-574)||(10455808-10455849)
chr3 (523-576)||(21419453-21419506)
chr3 (522-574)||(8039835-8039887)
chr3 (522-574)||(8383264-8383316)
chr3 (522-566)||(49505162-49505206)
[»] chr8 (6 HSPs)
chr8 (523-572)||(11803267-11803316)
chr8 (523-574)||(4786338-4786389)
chr8 (501-574)||(13844596-13844669)
chr8 (513-574)||(15816129-15816190)
chr8 (522-574)||(14634141-14634193)
chr8 (522-566)||(14731719-14731763)
[»] chr6 (19 HSPs)
chr6 (501-566)||(17302333-17302398)
chr6 (525-566)||(17411876-17411917)
chr6 (522-574)||(24614417-24614469)
chr6 (522-574)||(32511666-32511718)
chr6 (523-574)||(14721249-14721300)
chr6 (522-573)||(32298608-32298659)
chr6 (522-572)||(7086802-7086852)
chr6 (495-573)||(7938096-7938174)
chr6 (501-574)||(7996378-7996451)
chr6 (501-574)||(8022350-8022423)
chr6 (535-572)||(11424713-11424750)
chr6 (522-574)||(7151419-7151471)
chr6 (522-574)||(7265593-7265645)
chr6 (522-574)||(7723250-7723302)
chr6 (521-561)||(8389485-8389525)
chr6 (522-574)||(9025494-9025546)
chr6 (522-574)||(9195754-9195806)
chr6 (518-574)||(24115847-24115903)
chr6 (522-566)||(24832595-24832639)
[»] chr2 (9 HSPs)
chr2 (501-574)||(34784982-34785055)
chr2 (523-566)||(30527603-30527646)
chr2 (533-563)||(2423887-2423917)
chr2 (521-574)||(18622612-18622665)
chr2 (521-565)||(2665897-2665941)
chr2 (495-559)||(20473302-20473366)
chr2 (494-566)||(31808056-31808128)
chr2 (522-574)||(34691805-34691857)
chr2 (522-574)||(34714217-34714269)
[»] scaffold0697 (1 HSPs)
scaffold0697 (523-574)||(1652-1703)
[»] scaffold0024 (1 HSPs)
scaffold0024 (523-566)||(68250-68293)


Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 17 - 579
Target Start/End: Complemental strand, 35999885 - 35999317
Alignment:
Q  17 aaaaggttacactaccactacacaaaactaataacctagctgaaaaaagaaaagaatcttagacatggctggtaattgttcagaaggattaggtgatgat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35999885 aaaaggttacactaccactacacaaaactaataacctagctgaaaaaagaaaagaatcttagacatggctggtaattgttcagaaggattaggtgatgat 35999786  T
Q  117 ttctttgagcagatcttagcggtgcctgagaacggagttggatatggaggagtgttgcaattagggtccacacctcatggtggttctttgagaggaggag 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35999785 ttctttgagcagatcttagcagtgcctgagaacggagttggatatggaggagtgttgcaattagggtccacacctcatggtggttctttgagaggaggag 35999686  T
Q  217 g---aggaataatgccattagggttgaatttggagcaaaatcatcatgggtttctcaggcagcatcaagatgcaacacggtttgttgataacgttgttga 313  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35999685 gaggaggaataatgccattagggttgaatttggagcaaaatcatcatgggtttctcaggcagcatcaagatggaacacggtttgttgataacgttgttga 35999586  T
Q  314 tgttgaaggaaatattaccaat---aacaacaacaaccatcaccatcttcgtctacatgatatcaataatcgtnnnnnnnnnnnnnnnnntatcacttct 410  Q
    ||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||||||| |                 ||||||||||    
T  35999585 tgttgaaggaaatattaccaataacaacaacaacaaccatcatcatcttcgtctacatgatatcaataatcat---aacaacaacaacaatatcacttct 35999489  T
Q  411 tcttcaccttcttctaccccgggaatcactgtatgttttcattctctt---ttatttaattaatcatattattctatatgaaacatagacatagacacgg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||| ||| ||| ||||||    
T  35999488 tcttcaccttcttctaccccgggaatcactgtatgttttcattctcttttattatttaattaatcatattattctctatgaaacacagatataaacacgg 35999389  T
Q  508 acataccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcgaatcc 579  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  35999388 gcataccgatacaactaataatttaagaaaatcatataatttagtataattatatgtgttgatgtcggatcc 35999317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 521 - 572
Target Start/End: Complemental strand, 12707926 - 12707875
Alignment:
Q  521 actaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 572  Q
    |||||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  12707926 actaataatttaagaaaatcatataatttagtgcaattatatgtattggtgt 12707875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 521 - 572
Target Start/End: Complemental strand, 12713380 - 12713329
Alignment:
Q  521 actaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 572  Q
    |||||||||| |||||||||| |||||||||| ||||||||||| |||||||    
T  12713380 actaataatttaagaaaatcacataatttagtgtaattatatgtattggtgt 12713329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 521 - 572
Target Start/End: Complemental strand, 12717471 - 12717420
Alignment:
Q  521 actaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 572  Q
    |||||||||| |||||||||| |||||||||| ||||||||||| |||||||    
T  12717471 actaataatttaagaaaatcacataatttagtgtaattatatgtattggtgt 12717420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 522 - 574
Target Start/End: Original strand, 13436465 - 13436517
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||||||| ||| |||||| |||||| ||| |||||||||||||||||||||    
T  13436465 ctaataatttaaggaaatcacataattcagtgtaattatatgtgttggtgtcg 13436517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 21530697 - 21530748
Alignment:
Q  523 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||||||  ||||||||||||||||| ||||||||||| |||| |||||||    
T  21530697 taataatttgagaaaatcatataatttggtataattataagtgtcggtgtcg 21530748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 574
Target Start/End: Complemental strand, 39130818 - 39130767
Alignment:
Q  523 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||||||  ||||||| |||||||||||| ||||||||||||| |||||||    
T  39130818 taataattttagaaaattatataatttagtgtaattatatgtgtcggtgtcg 39130767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 52903257 - 52903308
Alignment:
Q  523 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||| || |||||||||||||| ||| ||||||||||||| |||||||    
T  52903257 taataatttaataaaatcatataattcagtgtaattatatgtgtcggtgtcg 52903308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 527 - 573
Target Start/End: Original strand, 2784568 - 2784614
Alignment:
Q  527 aattgaagaaaatcatataatttagtataattatatgtgttggtgtc 573  Q
    |||| |||||||||| |||||| ||||||||||||||||| ||||||    
T  2784568 aatttaagaaaatcacataattgagtataattatatgtgtcggtgtc 2784614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 574
Target Start/End: Complemental strand, 14332695 - 14332642
Alignment:
Q  521 actaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||||||||  ||||||||| |||||||||| ||||||||||| | |||||||    
T  14332695 actaataatttgagaaaatcacataatttagtgtaattatatgtctcggtgtcg 14332642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Original strand, 6427357 - 6427409
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  ||||||||| |||||| | | |||||||||||||||||||||    
T  6427357 ctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcg 6427409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Original strand, 34371721 - 34371772
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||||||||| |||||||| |||||| ||| ||||||||||||| |||||||    
T  34371721 ctaataattga-gaaaatcacataattcagtgtaattatatgtgtcggtgtcg 34371772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 514 - 573
Target Start/End: Original strand, 28862304 - 28862363
Alignment:
Q  514 cgatacaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgtc 573  Q
    |||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28862304 cgataccattaataattgaagaaaatcatataatttagtataattacatgtgttggtgtc 28862363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 522 - 574
Target Start/End: Original strand, 39205887 - 39205939
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  ||||||||||||||||  || |||||||||||||||||||||    
T  39205887 ctaataatttgagaaaatcatataattaggtgtaattatatgtgttggtgtcg 39205939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 562
Target Start/End: Original strand, 12927639 - 12927701
Alignment:
Q  500 agacacggacataccgatacaactaataattgaagaaaatcatataatttagtataattatat 562  Q
    ||||||||||| ||||| |   |||||||||  |||||||||||||||||||| |||||||||    
T  12927639 agacacggacacaccgacatcgctaataatttgagaaaatcatataatttagtgtaattatat 12927701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 522 - 572
Target Start/End: Complemental strand, 23012460 - 23012410
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 572  Q
    |||||||||  |||||||||||||||||| | ||||||||||||| |||||    
T  23012460 ctaataatttgagaaaatcatataatttaatgtaattatatgtgtcggtgt 23012410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 522 - 564
Target Start/End: Original strand, 31682041 - 31682082
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgt 564  Q
    ||||||||||| ||||||||||||||||||| |||||||||||    
T  31682041 ctaataattga-gaaaatcatataatttagtgtaattatatgt 31682082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 574
Target Start/End: Original strand, 33178023 - 33178084
Alignment:
Q  513 ccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||| ||||||||||||| || ||||||| |||||||||| |||||| | |||| |||||||    
T  33178023 ccgacacaactaataatttaaaaaaatcacataatttagtgtaattacaagtgtcggtgtcg 33178084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 566
Target Start/End: Complemental strand, 36577717 - 36577684
Alignment:
Q  533 agaaaatcatataatttagtataattatatgtgt 566  Q
    ||||||| ||||||||||||||||||||||||||    
T  36577717 agaaaatgatataatttagtataattatatgtgt 36577684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Complemental strand, 6471941 - 6471889
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  ||||||||| |||||| ||| ||||||||||||| |||||||    
T  6471941 ctaataatttgagaaaatcacataattcagtgtaattatatgtgtgggtgtcg 6471889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Complemental strand, 16203847 - 16203795
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  ||||||||  |||||||||| ||||||||||||| |||||||    
T  16203847 ctaataatttgagaaaatctcataatttagtgtaattatatgtgtcggtgtcg 16203795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Original strand, 36838550 - 36838602
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  ||||||| | |||||||||| ||||||||||||| |||||||    
T  36838550 ctaataatttgagaaaattacataatttagtgtaattatatgtgtcggtgtcg 36838602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 496 - 562
Target Start/End: Complemental strand, 21539945 - 21539879
Alignment:
Q  496 acatagacacggacataccgatacaactaataattgaagaaaatcatataatttagtataattatat 562  Q
    |||||||||| ||||| |||| || | |||||||| ||||||||||||||||||||| |||||||||    
T  21539945 acatagacactgacatgccgacaccattaataatttaagaaaatcatataatttagtgtaattatat 21539879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 516 - 564
Target Start/End: Complemental strand, 49653030 - 49652982
Alignment:
Q  516 atacaactaataattgaagaaaatcatataatttagtataattatatgt 564  Q
    |||| |||||||||| |||||||||| |||||| |||||||||||||||    
T  49653030 atactactaataatttaagaaaatcagataattcagtataattatatgt 49652982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 522 - 572
Target Start/End: Complemental strand, 5832746 - 5832696
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 572  Q
    |||||||||  |||||||||||| |||||||||| |||| |||||||||||    
T  5832746 ctaataatttgagaaaatcatatgatttagtatagttatttgtgttggtgt 5832696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 574
Target Start/End: Original strand, 7970537 - 7970578
Alignment:
Q  533 agaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||||||||| ||| ||||||||||| |||||||||    
T  7970537 agaaaatcatataattcagtgtaattatatgttttggtgtcg 7970578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 566
Target Start/End: Original strand, 13134460 - 13134501
Alignment:
Q  525 ataattgaagaaaatcatataatttagtataattatatgtgt 566  Q
    |||||| |||||||||| |||||||||| |||||||||||||    
T  13134460 ataatttaagaaaatcacataatttagtgtaattatatgtgt 13134501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 566
Target Start/End: Complemental strand, 999400 - 999356
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgt 566  Q
    |||||||||  || ||||||||||||||||| |||||||||||||    
T  999400 ctaataatttgagtaaatcatataatttagtgtaattatatgtgt 999356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 522 - 574
Target Start/End: Original strand, 3721100 - 3721152
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  ||||||||| |||||||||||||||||||||||| |||||||    
T  3721100 ctaataatttgagaaaatcacataatttagtataattatatgtgtcggtgtcg 3721152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 500 - 572
Target Start/End: Original strand, 5233614 - 5233686
Alignment:
Q  500 agacacggacataccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 572  Q
    |||||| |||| ||||||||   ||||||||  ||||||||| ||||| |||| |||||||||||||||||||    
T  5233614 agacactgacacaccgatacggttaataatttgagaaaatcacataatctagtgtaattatatgtgttggtgt 5233686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 522 - 570
Target Start/End: Original strand, 8160423 - 8160471
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggt 570  Q
    ||||||||| |||||||| | |||||||||| |||||||||||||||||    
T  8160423 ctaataatttaagaaaattacataatttagtgtaattatatgtgttggt 8160471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 574
Target Start/End: Complemental strand, 35297728 - 35297672
Alignment:
Q  518 acaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||| ||||||||  ||||||||| |||||| | |||||||||||||||||||||||    
T  35297728 acaattaataatttgagaaaatcacataattcattataattatatgtgttggtgtcg 35297672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 533 - 572
Target Start/End: Complemental strand, 33384623 - 33384584
Alignment:
Q  533 agaaaatcatataatttagtataattatatgtgttggtgt 572  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  33384623 agaaaatcctataatttagtgtaattatatgtgttggtgt 33384584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 574
Target Start/End: Original strand, 7758328 - 7758381
Alignment:
Q  521 actaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||||||||  ||||||| |||||||| ||||||||||| ||||| |||||||    
T  7758328 actaataattttagaaaattatataattcagtataattatgtgtgtcggtgtcg 7758381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 572
Target Start/End: Original strand, 15902802 - 15902879
Alignment:
Q  495 gacatagacacggacataccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 572  Q
    |||| |||||| ||||| |||| || | ||||||||  | ||||||| |||||||||| ||||||||||||| |||||    
T  15902802 gacacagacactgacatgccgacaccaataataatttgataaaatcacataatttagtgtaattatatgtgtcggtgt 15902879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 574
Target Start/End: Complemental strand, 18213074 - 18213033
Alignment:
Q  533 agaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||||||| |||||||||| ||||||||||||| |||||||    
T  18213074 agaaaatcacataatttagtgtaattatatgtgtcggtgtcg 18213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 576
Target Start/End: Original strand, 18226964 - 18227005
Alignment:
Q  535 aaaatcatataatttagtataattatatgtgttggtgtcgaa 576  Q
    |||||||||||||| |||||||| |||||||| |||||||||    
T  18226964 aaaatcatataattcagtataatcatatgtgtcggtgtcgaa 18227005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 572
Target Start/End: Complemental strand, 23849509 - 23849460
Alignment:
Q  523 taataattgaagaaaatcatataatttagtataattatatgtgttggtgt 572  Q
    |||||||| ||||||| || |||||| ||||||||||||||||| |||||    
T  23849509 taataatttaagaaaaacacataattcagtataattatatgtgtcggtgt 23849460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 562
Target Start/End: Original strand, 5235993 - 5236033
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatat 562  Q
    ||||||||| |||||||| |||||||||||| |||||||||    
T  5235993 ctaataatttaagaaaattatataatttagtgtaattatat 5236033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Complemental strand, 7328743 - 7328691
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  ||||||| | |||||||||| ||||||||||||| |||||||    
T  7328743 ctaataatttgagaaaataacataatttagtgtaattatatgtgtcggtgtcg 7328691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 573
Target Start/End: Complemental strand, 11061149 - 11061077
Alignment:
Q  501 gacacggacataccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgtc 573  Q
    ||||| |||| ||||| ||| |||||||||  | ||||||| ||||||||||||||||| | |||| ||||||    
T  11061149 gacactgacacaccgacacagctaataatttgaaaaaatcacataatttagtataattacaagtgtcggtgtc 11061077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 495 - 574
Target Start/End: Original strand, 28678283 - 28678362
Alignment:
Q  495 gacatagacacggacataccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||||||||| ||||| ||||  |  ||||||||| || ||||||| |||||||||||||||| ||||||| |||||||    
T  28678283 gacatagacactgacatgccgacgctgctaataatttaataaaatcacataatttagtataattgtatgtgtcggtgtcg 28678362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 523 - 576
Target Start/End: Complemental strand, 7614466 - 7614413
Alignment:
Q  523 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcgaa 576  Q
    |||||||| |||||||||| |||||| ||||||||||||| ||| |||||||||    
T  7614466 taataatttaagaaaatcacataattcagtataattatatatgtcggtgtcgaa 7614413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 522 - 574
Target Start/End: Complemental strand, 11313852 - 11313800
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  ||||||||| |||||||||| |||||||||||||| ||||||    
T  11313852 ctaataatttgagaaaatcacataatttagtgtaattatatgtgttagtgtcg 11313800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 566
Target Start/End: Original strand, 29508423 - 29508495
Alignment:
Q  494 agacatagacacggacataccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgt 566  Q
    |||||| ||||  |||| |||||||| ||||||||||  | |||||||||||||| ||| |||||||||||||    
T  29508423 agacatggacattgacacaccgataccactaataatttgaaaaaatcatataattcagtgtaattatatgtgt 29508495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 574
Target Start/End: Complemental strand, 15314915 - 15314876
Alignment:
Q  535 aaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  15314915 aaaatcacataatttagtgtaattatatgtgttggtgtcg 15314876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 16789020 - 16789071
Alignment:
Q  523 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||| || |||||||||||||| ||| |||||||| ||||||||||||    
T  16789020 taataatttaaaaaaatcatataattcagtgtaattataagtgttggtgtcg 16789071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 574
Target Start/End: Complemental strand, 25948977 - 25948887
Alignment:
Q  484 tatgaaacatagacatagacacggacataccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||| || |||||  ||||| ||||| |||||||  |||||||||  | ||||||| |||||| ||| |||||||| ||||||||||||    
T  25948977 tatgaagcacagacacggacactgacatgccgatacggctaataatttgaaaaaatcacataattcagtgtaattataagtgttggtgtcg 25948887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 574
Target Start/End: Original strand, 10455808 - 10455849
Alignment:
Q  533 agaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||||||| | ||| |||||||||||||||||||||    
T  10455808 agaaaatcatataactaagtgtaattatatgtgttggtgtcg 10455849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 576
Target Start/End: Complemental strand, 21419506 - 21419453
Alignment:
Q  523 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcgaa 576  Q
    |||||||| |||||||| |||||||| | | ||||||||| |||||||||||||    
T  21419506 taataatttaagaaaataatataattcaatgtaattatatatgttggtgtcgaa 21419453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Complemental strand, 8039887 - 8039835
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  ||||||| |||||||| ||| ||||||||||||| |||||||    
T  8039887 ctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcg 8039835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Original strand, 8383264 - 8383316
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  |||||||||||||||| ||| |||||||| |||| |||||||    
T  8383264 ctaataatttgagaaaatcatataattcagtgtaattataagtgtcggtgtcg 8383316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 566
Target Start/End: Complemental strand, 49505206 - 49505162
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgt 566  Q
    |||||||||  ||||||||| |||||||||| |||||||||||||    
T  49505206 ctaataatttgagaaaatcacataatttagtgtaattatatgtgt 49505162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 523 - 572
Target Start/End: Original strand, 11803267 - 11803316
Alignment:
Q  523 taataattgaagaaaatcatataatttagtataattatatgtgttggtgt 572  Q
    |||||||| |||||||||| |||||| ||| |||||||||||||||||||    
T  11803267 taataatttaagaaaatcacataattcagtgtaattatatgtgttggtgt 11803316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 574
Target Start/End: Complemental strand, 4786389 - 4786338
Alignment:
Q  523 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||| |||||||||| |||||| ||| ||||||||||||| |||||||    
T  4786389 taataatttaagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 4786338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 574
Target Start/End: Complemental strand, 13844669 - 13844596
Alignment:
Q  501 gacacggacataccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||||||||  |||| ||  |||||||||  ||||||||| |||||| ||| ||||||||||||| |||||||    
T  13844669 gacacggacacgccgacactgctaataatttgagaaaatcacataattgagtgtaattatatgtgtcggtgtcg 13844596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 574
Target Start/End: Complemental strand, 15816190 - 15816129
Alignment:
Q  513 ccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||| |||||||||||||  | ||||||| |||||||||| |||||||| |||| |||||||    
T  15816190 ccgacacaactaataatttgaaaaaatcacataatttagtgtaattataagtgtcggtgtcg 15816129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Complemental strand, 14634193 - 14634141
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||| |||| |||||||| |||||||| ||| ||||||||| |||||||||||    
T  14634193 ctaacaatttaagaaaattatataattcagtgtaattatatttgttggtgtcg 14634141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 566
Target Start/End: Original strand, 14731719 - 14731763
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgt 566  Q
    |||||||||  ||||||||| |||||||||| |||||||||||||    
T  14731719 ctaataatttgagaaaatcacataatttagtgtaattatatgtgt 14731763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 501 - 566
Target Start/End: Original strand, 17302333 - 17302398
Alignment:
Q  501 gacacggacataccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgt 566  Q
    ||||| ||||||  || ||||||||||||| |||||||||| ||||||| || |||||||||||||    
T  17302333 gacactgacatatggacacaactaataatttaagaaaatcacataattttgtgtaattatatgtgt 17302398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 525 - 566
Target Start/End: Complemental strand, 17411917 - 17411876
Alignment:
Q  525 ataattgaagaaaatcatataatttagtataattatatgtgt 566  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  17411917 ataatttaagaaaatcatataattcagtataattatatgtgt 17411876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 522 - 574
Target Start/End: Original strand, 24614417 - 24614469
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||||||| || ||||| |||||||||||| ||||| |||||||||||||||    
T  24614417 ctaataatttaaaaaaattatataatttagtgtaattgtatgtgttggtgtcg 24614469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 522 - 574
Target Start/End: Complemental strand, 32511718 - 32511666
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||||||| |||||||||| |||||| ||| |||||||| ||||||||||||    
T  32511718 ctaataatttaagaaaatcacataattcagtgtaattataagtgttggtgtcg 32511666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 14721249 - 14721300
Alignment:
Q  523 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||| |||||||| | |||||| | |||||||||||||||||||||||    
T  14721249 taataatttaagaaaattacataattcactataattatatgtgttggtgtcg 14721300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 522 - 573
Target Start/End: Complemental strand, 32298659 - 32298608
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtc 573  Q
    ||||||||| ||||  |||| |||||||||| ||||||||||||||||||||    
T  32298659 ctaataatttaagatcatcacataatttagtgtaattatatgtgttggtgtc 32298608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 522 - 572
Target Start/End: Original strand, 7086802 - 7086852
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 572  Q
    |||||||||  ||||||||| |||||||||| ||||||||||||| |||||    
T  7086802 ctaataatttgagaaaatcacataatttagtgtaattatatgtgtcggtgt 7086852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 573
Target Start/End: Original strand, 7938096 - 7938174
Alignment:
Q  495 gacatagacacggacataccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgtc 573  Q
    ||||| ||||| ||||  |||| ||| |||||||||  | |||||||||||||||||| |||||||| |||| ||||||    
T  7938096 gacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattataagtgtcggtgtc 7938174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 574
Target Start/End: Complemental strand, 7996451 - 7996378
Alignment:
Q  501 gacacggacataccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||| ||||| |||| ||  |||||||||  |||||||||||||||| ||| |||||||||| || |||||||    
T  7996451 gacactgacatgccgacactgctaataatttgagaaaatcatataattcagtgtaattatatgcgtcggtgtcg 7996378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 574
Target Start/End: Original strand, 8022350 - 8022423
Alignment:
Q  501 gacacggacataccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||| ||||| |||| ||  |||||||||  |||||||||||||||| ||| |||||||||| || |||||||    
T  8022350 gacactgacatgccgacactgctaataatttgagaaaatcatataattcagtgtaattatatgcgtcggtgtcg 8022423  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 11424750 - 11424713
Alignment:
Q  535 aaaatcatataatttagtataattatatgtgttggtgt 572  Q
    |||||||||||||| | |||||||||||||||||||||    
T  11424750 aaaatcatataattcaatataattatatgtgttggtgt 11424713  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Original strand, 7151419 - 7151471
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  | ||||||| |||||| ||| |||||||||||||||||||||    
T  7151419 ctaataatttgaaaaaatcacataattaagtgtaattatatgtgttggtgtcg 7151471  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Complemental strand, 7265645 - 7265593
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  ||||||||| |||||| ||| ||||||||||||| |||||||    
T  7265645 ctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 7265593  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Complemental strand, 7723302 - 7723250
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  |||||||||||||||| || |||||||||||| | |||||||    
T  7723302 ctaataatttgagaaaatcatataattcagcataattatatgtatcggtgtcg 7723250  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 561
Target Start/End: Complemental strand, 8389525 - 8389485
Alignment:
Q  521 actaataattgaagaaaatcatataatttagtataattata 561  Q
    |||||||||| ||||||||||||||||| ||| ||||||||    
T  8389525 actaataatttaagaaaatcatataattcagtgtaattata 8389485  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Complemental strand, 9025546 - 9025494
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  ||||||||| |||||| ||| ||||||||||||| |||||||    
T  9025546 ctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 9025494  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Complemental strand, 9195806 - 9195754
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  ||||||| | |||||||||| ||||||||||||| |||||||    
T  9195806 ctaataatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcg 9195754  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 574
Target Start/End: Complemental strand, 24115903 - 24115847
Alignment:
Q  518 acaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||||||  | ||||||| |||||| | ||||||||||| |||||||||||    
T  24115903 acaactaataatttcaaaaaatcacataattcaatataattatatatgttggtgtcg 24115847  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 566
Target Start/End: Original strand, 24832595 - 24832639
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgt 566  Q
    |||||||||  |||||||| ||||||||||| |||||||||||||    
T  24832595 ctaataatttgagaaaatcttataatttagtgtaattatatgtgt 24832639  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 501 - 574
Target Start/End: Complemental strand, 34785055 - 34784982
Alignment:
Q  501 gacacggacataccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||| |||| ||||| |||||||||  ||  ||||||||| |||||||||| ||||||||||||| |||||||    
T  34785055 gacactgacacaccgacacaactaatttttttagaaaatcacataatttagtgtaattatatgtgtcggtgtcg 34784982  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 566
Target Start/End: Complemental strand, 30527646 - 30527603
Alignment:
Q  523 taataattgaagaaaatcatataatttagtataattatatgtgt 566  Q
    ||||||||  |||||||||||||||||||| |||||||||||||    
T  30527646 taataatttgagaaaatcatataatttagtgtaattatatgtgt 30527603  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 533 - 563
Target Start/End: Original strand, 2423887 - 2423917
Alignment:
Q  533 agaaaatcatataatttagtataattatatg 563  Q
    |||||||||||||||||||||||||||||||    
T  2423887 agaaaatcatataatttagtataattatatg 2423917  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 574
Target Start/End: Original strand, 18622612 - 18622665
Alignment:
Q  521 actaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||| || ||||||| |||||| ||| |||||||| ||||||||||||    
T  18622612 actaataatttaataaaatcacataattcagtgtaattatacgtgttggtgtcg 18622665  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 565
Target Start/End: Complemental strand, 2665941 - 2665897
Alignment:
Q  521 actaataattgaagaaaatcatataatttagtataattatatgtg 565  Q
    ||||||||||  ||||||||| |||||||||| ||||||||||||    
T  2665941 actaataattttagaaaatcacataatttagtgtaattatatgtg 2665897  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 559
Target Start/End: Original strand, 20473302 - 20473366
Alignment:
Q  495 gacatagacacggacataccgatacaactaataattgaagaaaatcatataatttagtataatta 559  Q
    |||| |||||| ||||| |||| ||||||||||||| || ||| |||||||||| ||| ||||||    
T  20473302 gacacagacactgacatgccgacacaactaataatttaaaaaactcatataattcagtgtaatta 20473366  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 566
Target Start/End: Original strand, 31808056 - 31808128
Alignment:
Q  494 agacatagacacggacataccgatacaactaataattgaagaaaatcatataatttagtataattatatgtgt 566  Q
    |||||| ||||| |||| ||||| ||  ||||||||| || ||||||| |||||| ||| |||||||||||||    
T  31808056 agacattgacactgacacaccgacaccgctaataatttaacaaaatcacataattcagtgtaattatatgtgt 31808128  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Complemental strand, 34691857 - 34691805
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  | |||||||||||||| ||| ||||||||||||| |||||||    
T  34691857 ctaataatttgataaaatcatataattcagtgtaattatatgtgtcggtgtcg 34691805  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 574
Target Start/End: Complemental strand, 34714269 - 34714217
Alignment:
Q  522 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    |||||||||  | |||||||||||||| ||| ||||||||||||| |||||||    
T  34714269 ctaataatttgataaaatcatataattcagtgtaattatatgtgtcggtgtcg 34714217  T

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Target: scaffold0697 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 1652 - 1703
Alignment:
Q  523 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 574  Q
    ||||||||  ||||||||||||||||| ||||||||||| |||| |||||||    
T  1652 taataatttgagaaaatcatataatttggtataattataagtgtcggtgtcg 1703  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 566
Target Start/End: Complemental strand, 68293 - 68250
Alignment:
Q  523 taataattgaagaaaatcatataatttagtataattatatgtgt 566  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||    
T  68293 taataatttgagaaaatcatataatttagtataattataggtgt 68250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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