View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13765_high_1 (Length: 1135)

Name: NF13765_high_1
Description: NF13765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13765_high_1
NF13765_high_1
[»] chr8 (3 HSPs)
chr8 (979-1112)||(12934377-12934510)
chr8 (413-586)||(12933811-12933984)
chr8 (436-473)||(36999937-36999974)
[»] chr7 (2 HSPs)
chr7 (979-1112)||(15300163-15300296)
chr7 (406-443)||(6692086-6692123)
[»] chr4 (5 HSPs)
chr4 (979-1112)||(28608093-28608227)
chr4 (979-1112)||(14177647-14177780)
chr4 (413-586)||(28608621-28608794)
chr4 (413-563)||(14177081-14177231)
chr4 (421-474)||(20706182-20706234)
[»] chr6 (2 HSPs)
chr6 (406-443)||(796698-796735)
chr6 (406-443)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (406-443)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 54; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 979 - 1112
Target Start/End: Original strand, 12934377 - 12934510
Alignment:
Q  979 ccttattcttcagcagtcggaagcttgatgtatgcaatggtatgtactagacctgatattgctcacgcagttggtgttgtcagcaggtttcttgaaaatc 1078  Q
    ||||| || |||||||| || || ||||||||||||||||| || || || || ||||||||||| |||||||| ||||| ||||||||||||   ||||    
T  12934377 ccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttagcaggtttctttccaatc 12934476  T
Q  1079 ctggaaaggaacattgggaagcagtcaagtggat 1112  Q
    | ||||| |||||||||||||| || ||||||||    
T  12934477 cgggaaaagaacattgggaagctgtgaagtggat 12934510  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 413 - 586
Target Start/End: Original strand, 12933811 - 12933984
Alignment:
Q  413 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 511  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 12933909  T
Q  512 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 586  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  12933910 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 12933984  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 436 - 473
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  436 catggagatttggaagaggagatttatatggagcaacc 473  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

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Target: chr7 (Bit Score: 50; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 979 - 1112
Target Start/End: Original strand, 15300163 - 15300296
Alignment:
Q  979 ccttattcttcagcagtcggaagcttgatgtatgcaatggtatgtactagacctgatattgctcacgcagttggtgttgtcagcaggtttcttgaaaatc 1078  Q
    ||||| || |||||||| || || ||||||||||||||||| || || || || ||||||||||| |||||||| ||||| ||||||||||||   ||||    
T  15300163 ccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttagcaggtttctttccaatc 15300262  T
Q  1079 ctggaaaggaacattgggaagcagtcaagtggat 1112  Q
    | ||||| |||||||||||||  || ||||||||    
T  15300263 cgggaaaagaacattgggaagttgtgaagtggat 15300296  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  406 gagcagttggatgtgaaaactgcatttcttcatggaga 443  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 979 - 1112
Target Start/End: Complemental strand, 28608227 - 28608093
Alignment:
Q  979 ccttattcttcagcagtcggaagcttgatgtatgcaatggtatgtactagacctgatattgctcacgcagttggtgttgtcagcaggtttcttgaaaatc 1078  Q
    ||||| || |||||||| || || ||||||||||||||||| || || || || ||||||||||| |||||||| ||||| ||||||||||||   ||||    
T  28608227 ccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttagcaggtttctttccaatc 28608128  T
Q  1079 ctgg-aaaggaacattgggaagcagtcaagtggat 1112  Q
    | || ||| |||||||||||||| || ||||||||    
T  28608127 cgggaaaaagaacattgggaagctgtgaagtggat 28608093  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 979 - 1112
Target Start/End: Original strand, 14177647 - 14177780
Alignment:
Q  979 ccttattcttcagcagtcggaagcttgatgtatgcaatggtatgtactagacctgatattgctcacgcagttggtgttgtcagcaggtttcttgaaaatc 1078  Q
    ||||| || |||||||| || || ||||||||||||||||| || || || || ||||||||||| | |||||| ||||| ||||||||||||   ||||    
T  14177647 ccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgtagttggagttgttagcaggtttctttccaatc 14177746  T
Q  1079 ctggaaaggaacattgggaagcagtcaagtggat 1112  Q
    | ||||| ||||| |||||||| || ||||||||    
T  14177747 cgggaaaagaacactgggaagctgtgaagtggat 14177780  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 413 - 586
Target Start/End: Complemental strand, 28608794 - 28608621
Alignment:
Q  413 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 511  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||| ||| || || ||||| | ||| |||| |    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt 28608696  T
Q  512 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 586  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  28608695 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 28608621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 413 - 563
Target Start/End: Original strand, 14177081 - 14177231
Alignment:
Q  413 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 511  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 14177179  T
Q  512 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta 563  Q
    |||||||||| |||||  | |||||||| || || |||||||| || |||||    
T  14177180 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta 14177231  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 421 - 474
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  421 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 474  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 406 - 443
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  406 gagcagttggatgtgaaaactgcatttcttcatggaga 443  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  406 gagcagttggatgtgaaaactgcatttcttcatggaga 443  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  406 gagcagttggatgtgaaaactgcatttcttcatggaga 443  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

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