View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13765_high_3 (Length: 461)
Name: NF13765_high_3
Description: NF13765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13765_high_3 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 97 - 438
Target Start/End: Complemental strand, 22684888 - 22684547
Alignment:
| Q |
97 |
gaaaacaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttat |
196 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22684888 |
gaaatcaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttctgtgttttgttttat |
22684789 |
T |
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| Q |
197 |
ttataggttgtgactcctttggcaaaaattgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgtt |
296 |
Q |
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| T |
22684788 |
ttataggttgtgactcctttggcaaaatttgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgtt |
22684689 |
T |
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| Q |
297 |
atgctatgtctctttttatcagaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattatta |
396 |
Q |
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| T |
22684688 |
atgctatgtctctttttattaaaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattatta |
22684589 |
T |
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| Q |
397 |
ctacctttgtgcgttgctctattgcacttacacttctgatga |
438 |
Q |
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| T |
22684588 |
ctacctttgtgcgttgctctgttgcacttacacttctgatga |
22684547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 134 - 414
Target Start/End: Complemental strand, 22696146 - 22695870
Alignment:
| Q |
134 |
ctttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttatttataggttgtgactcctttggcaaaaattgccttaa |
233 |
Q |
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| T |
22696146 |
ctttaaattcatgttttatcacatagatgacaaattttaacaaatttctgtgttttattttacatataggttgtgactcctctggcaaaatatgccttaa |
22696047 |
T |
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| Q |
234 |
tattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgttatgctatgtctctttttatcagaacaactttagtgtt |
333 |
Q |
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| T |
22696046 |
cattattgcctattgcatcaagcatagaggaactt---gtcccttctcctaggctaagatgttatcctatgtctattctcatcagaacagctttagtggt |
22695950 |
T |
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| Q |
334 |
ttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattattactacctttgtgcgttgct |
414 |
Q |
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| T |
22695949 |
ttcaagtttagttgtggccctctcttttccatattttggtaagttttgt-cataccattattactacctttgtgcattgct |
22695870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 24493250 - 24493177
Alignment:
| Q |
30 |
ataaatgcactcttcgagtggctcggtctagacaaatgtaagagtgatattgtgtagaataaccaaggaaaaca |
103 |
Q |
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| T |
24493250 |
ataaatgcactcttcgagtggctcggtctagacaaatataagagtgatattgtgtagaataaccaaggaaaaca |
24493177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 92615 - 92542
Alignment:
| Q |
30 |
ataaatgcactcttcgagtggctcggtctagacaaatgtaagagtgatattgtgtagaataaccaaggaaaaca |
103 |
Q |
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| T |
92615 |
ataaatgcactcttcgagtggctcgatctagacaaatgtaagagtgatattgtgtagaataaccaagtaaaaca |
92542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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