View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13765_low_1 (Length: 556)
Name: NF13765_low_1
Description: NF13765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13765_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 144 - 441
Target Start/End: Complemental strand, 34020844 - 34020547
Alignment:
| Q |
144 |
gtggaatttgagttggaattgaatttcggtgttataattaatggatgtaggcatttattttcaaatcatagtctactaagaccaaccaatataattgttc |
243 |
Q |
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| T |
34020844 |
gtggaatttgagttggaattgaatttcggtgttataattaatggatgtaggcatttattttcaaatcatagtctactaagacaaaccaatataattgttc |
34020745 |
T |
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| Q |
244 |
attgtccaattagggttgcttgtatattttttagtaacgttatcacttatatatttagttagtcttcgtattttttgtaacgttatcatttgtattgaac |
343 |
Q |
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| T |
34020744 |
attgtccaattagggttgcttgtatattttttagtaacgttatcacttatatatttagttagtcttcgtattttttgtaacgttatcatttgtattgaac |
34020645 |
T |
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| Q |
344 |
atttgactagtgataaaatatattatcttgcttttgcgagagagaaaaactacaacatgtgtaccgtttggtttttttacattcatttaacacttaat |
441 |
Q |
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| T |
34020644 |
atttgactagtgataaaatatattatcttgcttttgcgagagagaaaaactacaacatgtgtaccgtttggtttttctacattcattaaacacttaat |
34020547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 34020963 - 34020905
Alignment:
| Q |
25 |
tcatttaataaaagagtgaatgttaaagagagtgttatatagaaagtgtcattagtatg |
83 |
Q |
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| T |
34020963 |
tcatttaataaaagagtgaatgttaaagagaatgttatatagaaagtgtcattagtatg |
34020905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 60
Target Start/End: Original strand, 5452187 - 5452216
Alignment:
| Q |
31 |
aataaaagagtgaatgttaaagagagtgtt |
60 |
Q |
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| T |
5452187 |
aataaaagagtgaatgttaaagagagtgtt |
5452216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 3804637 - 3804608
Alignment:
| Q |
31 |
aataaaagagtgaatgttaaagagagtgtt |
60 |
Q |
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| T |
3804637 |
aataaaagagtgaatgttaaagagagtgtt |
3804608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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