View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13765_low_2 (Length: 333)
Name: NF13765_low_2
Description: NF13765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13765_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 2293862 - 2294042
Alignment:
| Q |
14 |
attttcaaattagcattagcattcattatcccattttcattggttacccacaacccactttcatttcttcaccagaatatacatagtttacgatttacat |
113 |
Q |
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| T |
2293862 |
attttcaaattagcattatcattcactatcccattttcatcggttacctacaatacactttcatttcttcacctgaata--catagtttacgatttacat |
2293959 |
T |
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| Q |
114 |
ctttt--taataaaaattataaactacactttatggttaacattggttgccactttgtttaatgtgtatatttaaaaagtggg |
194 |
Q |
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| T |
2293960 |
gtttttttaataaaaattataaactacactttgtggttaacattggttgtcactttgttcaatgtgtatatttaaaaagtggg |
2294042 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 2294053 - 2294111
Alignment:
| Q |
264 |
gtttaatggcaattaaattttaaaagcaattagtcctcgatagtattgtgctttgtaag |
322 |
Q |
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|||||||| ||||||||||||||| | ||||||| ||||||| |||||| |||||||| |
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| T |
2294053 |
gtttaatgccaattaaattttaaaggtaattagtactcgataatattgtaatttgtaag |
2294111 |
T |
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