View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13766_high_13 (Length: 237)
Name: NF13766_high_13
Description: NF13766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13766_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26803377 - 26803598
Alignment:
| Q |
1 |
acttgagctccacttaaaattagaagttcaaacaacatcctgaatatagacaacatcataatatttgttagtcttcatcgataatgcaattagttcatat |
100 |
Q |
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| T |
26803377 |
acttgagctccacttaaaattagaagttcaaacaacatcctgaatatagacaacatcataatattttttagtcttcatctataatgcaattagttcatat |
26803476 |
T |
|
| Q |
101 |
ttgaattgacagtgagattaacaaaattatggtaaaccaccgcaatattgataaaagttccaattttgagtttcaacaatattatagtgtcaccatgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26803477 |
ttgaattgacagtgagattaacaaaattatggtaaaccaccgcaatattgataaaagttccaattttgagtttcaacaatattatagtgtcatcatgatt |
26803576 |
T |
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| Q |
201 |
ttgccgaactatccgttcaata |
222 |
Q |
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|| || |||||||||||||||| |
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| T |
26803577 |
tttccaaactatccgttcaata |
26803598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18416852 - 18416893
Alignment:
| Q |
1 |
acttgagctccacttaaaattagaagttcaaacaacatcctg |
42 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||| |
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| T |
18416852 |
acttgagcaccacttaaaactagaagttcaaacaacatcctg |
18416893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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