View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13766_low_11 (Length: 241)
Name: NF13766_low_11
Description: NF13766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13766_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 7543408 - 7543169
Alignment:
| Q |
1 |
tggccgttgatgcttcctaccatacaatcaaccatcattttagtcataatcaaaataannnnnnnn---------gactagtggtggcaaagagcattta |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
7543408 |
tggccgttgatgcttcctaccatacaatcaaccatcattttagtcataatcaaaataaatcaaaataatttttttgactattggtggcaaagagcattta |
7543309 |
T |
|
| Q |
92 |
ctataaattattagatcaatatacatcaatgaatagacaaaaactggaggttatgaaaactatataagtgtgtnnnnnnnnnnnnnnntatacaaatgtc |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
7543308 |
ctataaattattagatcaatatacatcaatgaatagacaaaaactggaggttatgaaaactatataagtgagtaaaaaaactaaaaaatatacaaatgtc |
7543209 |
T |
|
| Q |
192 |
tatttctctacaaatctgatcaacaaaattaacaattcat |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7543208 |
tatttctctacaaatctgatcaacaaaattaacaattcat |
7543169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University