View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13766_low_16 (Length: 212)
Name: NF13766_low_16
Description: NF13766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13766_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 23225516 - 23225700
Alignment:
| Q |
16 |
cacacttttggttacagattcaattggtcacatattagaaatttctcttgacaggatgattagctttgtggcttttcttagtttcaattttattctaaaa |
115 |
Q |
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| T |
23225516 |
cacacttttggttacagattcaattggtcacatattagaaatttctcttgacaggat---tagctttgtggcctttcttagtttcaattttattctaaaa |
23225612 |
T |
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| Q |
116 |
gaaatgctaagatatagata-acacataaatagatgtatatatcaatgaaacaacattcagatcaaccattattaacattcttctcac |
202 |
Q |
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| T |
23225613 |
gaaatgctaagatatagatacacacataaatagatgtatatatcaatgaaacaacattcagatcaaccattattaacattcttgtcac |
23225700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 23201463 - 23201411
Alignment:
| Q |
145 |
tagatgtatatatcaatgaaacaacattcagatcaaccattattaacattctt |
197 |
Q |
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| T |
23201463 |
tagatgtatatatcaatgaaacaacattccaatcatccatcgttaacattctt |
23201411 |
T |
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