View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13766_low_2 (Length: 477)
Name: NF13766_low_2
Description: NF13766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13766_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 202 - 458
Target Start/End: Original strand, 1196076 - 1196332
Alignment:
| Q |
202 |
caacgaggtgcaggcatacctcaattcgaaggtagtaattctcggacgattgaagacttggaaagattgattcaaggttatattcaactatgtctcgagc |
301 |
Q |
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| T |
1196076 |
caacgaggtgcaggcatacctcaattcgaaggtagtaattctcggacgattgaagacttggaaagattgattcaaggttatattcaactatgtctcgagc |
1196175 |
T |
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| Q |
302 |
agcttcaagaagacctgaaagtagaaagggtgcccatgtcgttgctctgtaacgatttacaactgaagtattatgccctggagtccctgttcttccacat |
401 |
Q |
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| T |
1196176 |
agcttcaagaagacctgaaagtagaaagggtgcccatttcgttgctgtgtactgatttacaactgaagtattatgccctggagtccctgttcttccacat |
1196275 |
T |
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| Q |
402 |
cctaatgacaacaacacgaatttggtaggttcgtttggattcacaggtatgaaatca |
458 |
Q |
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| T |
1196276 |
cctaatgacaacaacacgaatttggtaggttcgtttggattcacaggtatgaaatca |
1196332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 1195841 - 1195967
Alignment:
| Q |
18 |
ctctcctgcctttataagtttttccatgttttctatggtagcattatcggcagtaagggttttatccaagctatactcctgcgcattatggacagttacg |
117 |
Q |
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| T |
1195841 |
ctctcctgcctttataagtttttccatgttttctatggtagcattatcagcagtaagggtttgatccaagctatactcctacacattatggaca-----g |
1195935 |
T |
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| Q |
118 |
tttattaaagattaaaaataatgattttagat |
149 |
Q |
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| T |
1195936 |
tttattcaagattaaaaataatgattttagat |
1195967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 391 - 469
Target Start/End: Original strand, 1277097 - 1277175
Alignment:
| Q |
391 |
ttcttccacatcctaatgacaacaacacgaatttggtaggttcgtttggattcacaggtatgaaatcaggattcttctc |
469 |
Q |
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| T |
1277097 |
ttcttccacatcctaatgacaacaacacgattttggtaggttcgtttggattcacaggaatgaaattaggattcttctc |
1277175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 1196006 - 1196056
Alignment:
| Q |
151 |
taaaaatagaagaagttatttggaactcattcgttataaattaattaaagg |
201 |
Q |
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| T |
1196006 |
taaaagtagaagaagttatttgaaactcattcgttataaattaattaaagg |
1196056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 1253036 - 1253105
Alignment:
| Q |
218 |
tacctcaattcgaaggtagtaattctcggacgattgaagacttggaaagattgattcaaggttatattca |
287 |
Q |
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| T |
1253036 |
tacctcaattcgaaggtagtaattgtctgaagaccgatgacttggaaatattgattcaagatgatattca |
1253105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 1242517 - 1242591
Alignment:
| Q |
392 |
tcttccacatcctaatgacaacaacacgaatttggtaggttcgtttggattcacaggtatgaaatcaggattctt |
466 |
Q |
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| T |
1242517 |
tcttccacatcctaatgataacaagaggattttggtaggttgattttcattcacagaaatgaaatcagaattctt |
1242591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 1253216 - 1253290
Alignment:
| Q |
392 |
tcttccacatcctaatgacaacaacacgaatttggtaggttcgtttggattcacaggtatgaaatcaggattctt |
466 |
Q |
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| T |
1253216 |
tcttccacatcctaatgataacaagaggattttggtaggttgattttcattcacagaaatgaaatcagaattctt |
1253290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 1242337 - 1242406
Alignment:
| Q |
218 |
tacctcaattcgaaggtagtaattctcggacgattgaagacttggaaagattgattcaaggttatattca |
287 |
Q |
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| T |
1242337 |
tacctcaattcgaaggtagtaattgtctgaagaccggtgacttggaaatattgattcaagatgatattca |
1242406 |
T |
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