View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13766_low_7 (Length: 279)

Name: NF13766_low_7
Description: NF13766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13766_low_7
NF13766_low_7
[»] chr2 (7 HSPs)
chr2 (19-264)||(11820999-11821244)
chr2 (19-244)||(11835120-11835345)
chr2 (25-153)||(11933638-11933766)
chr2 (25-153)||(11946859-11946987)
chr2 (25-166)||(11917454-11917595)
chr2 (71-173)||(11787190-11787292)
chr2 (25-123)||(11803694-11803792)
[»] chr4 (6 HSPs)
chr4 (19-165)||(38090579-38090725)
chr4 (45-167)||(38125411-38125533)
chr4 (45-129)||(38129402-38129486)
chr4 (47-112)||(38061991-38062056)
chr4 (22-102)||(38081821-38081901)
chr4 (29-112)||(38072726-38072809)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 11821244 - 11820999
Alignment:
Q  19 agataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaaccatgaacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  11821244 agataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccgacagttggacacacaccagcaggaaaaccatgaacc 11821145  T
Q  119 ttactcttctcataaattctataataaacttcaccaagtgtagcaccagcttgaacgtaagcaacttcgttctttatatcaacattgattgttctaagat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11821144 ttactcttctcataaattctataataaacttcaccaagtgtagcaccaccttgaacgtaagcaacttcgttctttatatcaacattgattgttctaagat 11821045  T
Q  219 taaacatatcaagtatgataaagggtgattgatttacataagaaat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11821044 taaacatatcaagtatgataaagggtgattgatttacataagaaat 11820999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 11835120 - 11835345
Alignment:
Q  19 agataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaaccatgaacc 118  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||| ||||||||     
T  11835120 agataaaccatattttctcaacattgcaccataccctccaccactgacgtgaccaccaacaccgacagttggacacacaccagcaggaaatccatgaact 11835219  T
Q  119 ttactcttctcataaattctataataaacttcaccaagtgtagcaccagcttgaacgtaagcaacttcgttctttatatcaacattgattgttctaagat 218  Q
    |||||||| ||| ||||||| || |||||||||||||||||||||||||||||||  ||||||||||| || ||||||||||||||||||||||| ||||    
T  11835220 ttactcttttcagaaattctgtagtaaacttcaccaagtgtagcaccagcttgaatataagcaacttcattttttatatcaacattgattgttcttagat 11835319  T
Q  219 taaacatatcaagtatgataaagggt 244  Q
    ||||||||||||||||||||||||||    
T  11835320 taaacatatcaagtatgataaagggt 11835345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 11933766 - 11933638
Alignment:
Q  25 accatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaaccatgaaccttactc 124  Q
    ||||||||||| || |||  ||||||| || |||||||| ||||| || ||||||||||| || |||||||| || || |||||||||||||| |||||     
T  11933766 accatattttctcatcatgttaccatatccaccaccacttaaatgtcctccaacaccaacggtaggacaaacgccggccggaaaaccatgaactttactt 11933667  T
Q  125 ttctcataaattctataataaacttcacc 153  Q
    || |||| ||||||||| |||| ||||||    
T  11933666 ttttcattaattctatagtaaagttcacc 11933638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 11946987 - 11946859
Alignment:
Q  25 accatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaaccatgaaccttactc 124  Q
    ||||||||||| || |||  ||||||| || |||||||| ||||| || ||||||||||| || |||||||| || || |||||||||||||| |||||     
T  11946987 accatattttctcatcatgttaccatatccaccaccacttaaatgtcctccaacaccaacggtaggacaaacgccggccggaaaaccatgaactttactt 11946888  T
Q  125 ttctcataaattctataataaacttcacc 153  Q
    || |||| ||||||||| |||| ||||||    
T  11946887 ttttcattaattctatagtaaagttcacc 11946859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 11917595 - 11917454
Alignment:
Q  25 accatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaaccatgaaccttactc 124  Q
    ||||||||||| || ||   ||||||| ||  ||||||| | ||| || |||||||||||||| |||||||| || || | |||| |||||   |||||     
T  11917595 accatattttctcatcaagttaccataaccagcaccactaacatgtcctccaacaccaacagtcggacaaacgccggccgcaaaagcatgagttttactt 11917496  T
Q  125 ttctcataaattctataataaacttcaccaagtgtagcacca 166  Q
    ||||||  ||||||||| ||||||||||||||||| ||||||    
T  11917495 ttctcagcaattctatagtaaacttcaccaagtgttgcacca 11917454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 11787190 - 11787292
Alignment:
Q  71 ccaccaacaccaacagttggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccagctt 170  Q
    ||||||||||| | | |||  |||| ||||||||| ||||||||||| | ||| |||||||  ||||||||||||||||| || |  |||||||| ||||    
T  11787190 ccaccaacacctaaacttgtgcaaagaccagcagggaaaccatgaacatcacttttctcatgtattctataataaacttcgccgatagtagcaccggctt 11787289  T
Q  171 gaa 173  Q
    |||    
T  11787290 gaa 11787292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 11803694 - 11803792
Alignment:
Q  25 accatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaaccatgaaccttact 123  Q
    |||||||||||  || | ||||||| | || || |||||||| ||||| || ||||||||||| ||||||  |||||| ||||| |||||||| |||||    
T  11803694 accatattttctaaataatgtaccaaatccacctccactgaagtgacctcctacaccaacagtaggacaactaccagctggaaatccatgaacgttact 11803792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 38090725 - 38090579
Alignment:
Q  19 agataaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaaccatgaacc 118  Q
    |||||| ||| |||||| || |||  |||||||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||     
T  38090725 agataacccaaattttctcatcatgttaccataccccccaccactaaaatgtccaccaacaccaacagtaggacaaaccccagctggaaaaccatgaaca 38090626  T
Q  119 ttactcttctcataaattctataataaacttcaccaagtgtagcacc 165  Q
     ||||  ||||| |||| ||||||||||||||||||| |||||||||    
T  38090625 ctactaatctcagaaatcctataataaacttcaccaattgtagcacc 38090579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 38125533 - 38125411
Alignment:
Q  45 taccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataata 144  Q
    ||||||||||||||||||| || ||||||||||||||||||||   |||||| ||||||||||| |||||||| |||||||||||  | || ||||||||    
T  38125533 taccataccctccaccactcaagtgaccaccaacaccaacagtaatacaaaccccagcaggaaagccatgaactttactcttctcccatatcctataata 38125434  T
Q  145 aacttcaccaagtgtagcaccag 167  Q
    ||| ||||||||| |||||||||    
T  38125433 aacctcaccaagtatagcaccag 38125411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 38129486 - 38129402
Alignment:
Q  45 taccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaaccatgaaccttactcttctc 129  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||||||||| || |||||||| |||||||| ||||| |||||    
T  38129486 taccataccctcctccactcaaatggccaccaacaccaacagttggacaaacgccggcaggaaagccatgaactttacttttctc 38129402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 38061991 - 38062056
Alignment:
Q  47 ccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaacca 112  Q
    ||||| || ||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||||    
T  38061991 ccatagccaccaccactgaagtgtccaccaacacctacagtaggacaagcaccggcaggaaaacca 38062056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 38081901 - 38081821
Alignment:
Q  22 taaaccatattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagc 102  Q
    |||||||||||| |||||||  || ||||| || |||||||||||||| ||||||||||| |  || |||||| |||||||    
T  38081901 taaaccatatttacgcaacaaggttccatagccgccaccactgaaatgtccaccaacacctattgtaggacaagcaccagc 38081821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 38072809 - 38072726
Alignment:
Q  29 tattttcgcaacattgtaccataccctccaccactgaaatgaccaccaacaccaacagttggacaaacaccagcaggaaaacca 112  Q
    ||||| |||||||  || ||||| || ||||||||||| || ||||||||||| ||||| |||||||||||  |||| ||||||    
T  38072809 tatttacgcaacaaggttccatagccaccaccactgaagtgtccaccaacacctacagtaggacaaacacctccagggaaacca 38072726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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