View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13767_high_2 (Length: 236)
Name: NF13767_high_2
Description: NF13767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13767_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 35853587 - 35853363
Alignment:
| Q |
1 |
ttgactgggctgtcgaaacatttaaggcagga-----ggacctttgaagttttacactggattccctatctattgtgccaggattactccgcaagtcata |
95 |
Q |
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| T |
35853587 |
ttgactgtgctgtcgaaacatttaaggcaggacaggaggacctttgaagttttacactggattccctatctattgtgccaggattactccgcaagtcata |
35853488 |
T |
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| Q |
96 |
gtattattcttttgcctttgttttgttctttaaactacttttgttactgttaccactattattattaatttgaaatttatatttgacggtattatcaact |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35853487 |
gtattattcttttgcctttgttttgttctttaaactacttttgctactgttaccactattattattaatttgaaatttatatttgacggtattctcaact |
35853388 |
T |
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| Q |
196 |
ttatatattgttcatggcaggtgct |
220 |
Q |
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| T |
35853387 |
ttatatattgttcatggcaggtgct |
35853363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 146
Target Start/End: Complemental strand, 35858139 - 35858020
Alignment:
| Q |
27 |
gcaggaggacctttgaagttttacactggattccctatctattgtgccaggattactccgcaagtcatagtattattcttttgcctttgttttgttcttt |
126 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| |||| ||||| |||||||||||||||||||||||| |
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| T |
35858139 |
gcaggaggacctttgaagttttacactggattctccgtctattgtgccaggatttttccttgtgtcacggtatttttcttttgcctttgttttgttcttc |
35858040 |
T |
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| Q |
127 |
aaactacttttgttactgtt |
146 |
Q |
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|||| ||| ||||||||||| |
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| T |
35858039 |
aaacgactattgttactgtt |
35858020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 35748738 - 35748833
Alignment:
| Q |
27 |
gcaggaggacctttgaagttttacactggattccctatctattgtgccaggattactccgcaagtcatagtattattcttttgcctttgttttgtt |
122 |
Q |
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| T |
35748738 |
gcaggaggaattttgaaattttacactggattccctctctattgtgtcaggatttctattggtgtcatggtattattcttttacctttgttttgtt |
35748833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 35857992 - 35857927
Alignment:
| Q |
155 |
tattattaatttgaaatttatatttgacggtattatcaactttatatattgttcatggcaggtgct |
220 |
Q |
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|||||| ||||| |||||||||||||| |||||| ||| |||||||||||| ||||||||| |||| |
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| T |
35857992 |
tattataaatttaaaatttatatttgagggtattctcagctttatatattgctcatggcagatgct |
35857927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 35729263 - 35729367
Alignment:
| Q |
1 |
ttgactgggctgtcgaaacatttaaggcaggaggacctttgaagttttacactggattccctatctattgtgccaggattactccgcaagtcatagtatt |
100 |
Q |
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||||||| || ||| |||| || || ||||||||||| || || |||||||||||||||||| |||| |||| |||||| |||| || ||||| ||| | |
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| T |
35729263 |
ttgactgtgccgtcaaaaccttcaaagcaggaggacccttcaaattttacactggattccctgtctactgtgttaggattgctccccacgtcatggtact |
35729362 |
T |
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| Q |
101 |
attct |
105 |
Q |
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||||| |
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| T |
35729363 |
attct |
35729367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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