View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13767_low_1 (Length: 543)
Name: NF13767_low_1
Description: NF13767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13767_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 31 - 519
Target Start/End: Original strand, 36463082 - 36463580
Alignment:
| Q |
31 |
taataaatgcgtgtatcgttaagtcaaagtcaaataatggagtattaatttatttcaataggtatg----acgaaagcaaggtccacc-actaactttat |
125 |
Q |
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| T |
36463082 |
taataaatacgggtatcgttaagtcaaagtcaaataatggagtattaatttatttcaataggtatgtatgacgaaagcaaggtccacccactaactttat |
36463181 |
T |
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| Q |
126 |
-----atgtgtttgcactttgctcagcatttcgtaaggatcatttcatttcctgcacatatatatacacacctgccatgttgctctaaaactcaacctat |
220 |
Q |
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| T |
36463182 |
tattcatgtgtttgcactttgctcagcatttcgtaaggatcatttcatttcctgcacatatatatacacacctgctatattgctctaaaactcaacctat |
36463281 |
T |
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| Q |
221 |
atcctcacaactcaattcttagctatgttgttctactacattttctttgctattatcttcctcttccttctcttcaagagaataatactaactcacaatc |
320 |
Q |
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| T |
36463282 |
atcctcacaactcaattcttagctatgttgttctacttcattttctttgctattatcttcctcttccttctcttcaagagaataatactaactcacaatc |
36463381 |
T |
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| Q |
321 |
ccaaaaaccatatttcacacttcaccacttctactcacacccctccttcataccccatcataggttgccttatctcattctgcaaaaacagccaccgcct |
420 |
Q |
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| T |
36463382 |
ccaaaaaccatatttcatatttcaccacttctactcacacccctccttcataccccatcataggttgccttatctcattctacaaaaacagccaccgcct |
36463481 |
T |
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| Q |
421 |
tctagatttctacactcaccttctctcccaatctccaactcaaacaatcctcatcaaccgcctcggcgcccgccgaaccatcataaccgccaaccctct |
519 |
Q |
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| T |
36463482 |
tctagatttctacactcaccttctctcccaatctccaactcaaacaatcctcatcaaccgcctcggcgcacgccgaaccatcataaccgccaatcctct |
36463580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 78 - 263
Target Start/End: Original strand, 36661709 - 36661902
Alignment:
| Q |
78 |
atttatttcaataggtatgacgaaagcaaggtccacc-actaactttat-----atgtgtttgcactttgctcagcat---ttcgtaaggatcatttcat |
168 |
Q |
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| T |
36661709 |
atttattacaataggtatgacgaaagcaaggttcacccactcactatattattcatgtgtttgcactttgaacataatatcttcttgaggatcatttaat |
36661808 |
T |
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| Q |
169 |
ttcctgcacatatatatacacacctgc-catgttgctctaaaactcaacctatatcctcacaactcaattcttagctatgttgttctactacattt |
263 |
Q |
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| T |
36661809 |
ttcctgca--tatatatacacacctgcacatattgctctcaaactcagcctatatccttgcatctcaattcctagctatattgttctactacattt |
36661902 |
T |
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