View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13767_low_3 (Length: 413)
Name: NF13767_low_3
Description: NF13767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13767_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 36210063 - 36210459
Alignment:
| Q |
1 |
atctctcttaaattgagtcgaccatgaagatgatacattacaatcaggactgtttgccgctctttcatcttagcaaaaagaagatcagctctttctgcag |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36210063 |
atctctcctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcag |
36210162 |
T |
|
| Q |
101 |
ttatcattcttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36210163 |
ttatcattcttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgt |
36210262 |
T |
|
| Q |
201 |
ttgaatctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36210263 |
ttgaatctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaa |
36210362 |
T |
|
| Q |
301 |
tgctcgactcnnnnnnnnggcccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaaccttattat |
397 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36210363 |
tgctcgactcttttttttggcccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaaccttattat |
36210459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 9 - 389
Target Start/End: Original strand, 36213413 - 36213799
Alignment:
| Q |
9 |
taaattgagtcgaccatgaagatgatacattacaatcaggactgtttgccgctctttcatcttagcaaaaagaagatcagctctttctgcagttatcatt |
108 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||| ||| | |
|
|
| T |
36213413 |
taaatcgagtctcccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcacaaataagatgagctctttctgcagttgtcact |
36213512 |
T |
|
| Q |
109 |
cttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgtttgaatct |
208 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
36213513 |
gttttactattaccaaaacacatgcaacaagttgattcggctacattcatcttatcattaaaattgagacctattgcatcaccaatttgtgtttgaatca |
36213612 |
T |
|
| Q |
209 |
ttgtaatgtctggcttctttgtcacagttg------ttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| |||| ||||||||||||||||||| | ||||| | |
|
|
| T |
36213613 |
ttgtaatgtctggcttctttgtcacagttgctgtgactgtgacaatcttttggaacaattgatctctctcagctcttcttatagctgtttttacagaaag |
36213712 |
T |
|
| Q |
303 |
ctcgactcnnnnnnnnggcccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaac |
389 |
Q |
| |
|
| |||| || |||||||||||||||||||||||||||||||||||||| ||| |||| || |||| || |||||||| |
|
|
| T |
36213713 |
ccttactctttcatccgggccgcataatccgattatattttctccttggtctctcacttttaatgcattcgtaatctgatctttaac |
36213799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 9 - 394
Target Start/End: Original strand, 36196959 - 36197338
Alignment:
| Q |
9 |
taaattgagtcgaccatgaagatgatacattacaatcaggactgtttgccgctctttcatcttagcaaaaagaagatcagctctttctgcagttatcatt |
108 |
Q |
| |
|
||||| ||||| ||| |||||| ||||| ||||| |||||||||||| ||||||||||||||||| | | ||||| |||||||||||||||| |||| |
|
|
| T |
36196959 |
taaatcgagtctcccacgaagatcatacagtacaactaggactgtttgcagctctttcatcttagcacacaaaagatgagctctttctgcagttgccatt |
36197058 |
T |
|
| Q |
109 |
cttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgtttgaatct |
208 |
Q |
| |
|
||||| |||||||||||| | |||||| ||||||| | ||| || ||||||||||| ||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
36197059 |
ctttttctattaccaaaaaacatgcaacaagttgattcagctggatccgtcttatcatcaaaat------ctattgcatcaccaattagtgtttgaatct |
36197152 |
T |
|
| Q |
209 |
ttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| | |||||| |||| ||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
36197153 |
ttgtaatgtctggcttctttgtcacagttgctgtgacaatcttttggaataattgatctctctcagctcttcttatagctgtttttgcagaatgcttgac |
36197252 |
T |
|
| Q |
309 |
tcnnnnnnnnggcccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaaccttat |
394 |
Q |
| |
|
|| ||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36197253 |
tcttttttctggcccacataatccaatgatattttctccttggtctctcactcttagtgcactcataatttgttctttaaccttat |
36197338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 165 - 393
Target Start/End: Original strand, 36188746 - 36188974
Alignment:
| Q |
165 |
attaaaattgagacctattgcattgccaatttctgtttgaatctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatga |
264 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |
|
|
| T |
36188746 |
attaaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttgttgtgacaatcttttggaacaattga |
36188845 |
T |
|
| Q |
265 |
tctttctctgctcttcttatagctgtttgtgcagaatgctcgactcnnnnnnnnggcccgcataatccgattatattttctccttggtctctcacactta |
364 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| | ||||||||| | || |
|
|
| T |
36188846 |
tctttctcagctgttcttatagctgttaatgcagaacgctcgactcttttttttggcccgcataatccgattatattttctccattgtctctcactccta |
36188945 |
T |
|
| Q |
365 |
gtgcactcataatttgttctttaacctta |
393 |
Q |
| |
|
||||||| ||||||| |||||||||| |
|
|
| T |
36188946 |
atgcactcgtaatttgaattttaacctta |
36188974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 21 - 393
Target Start/End: Original strand, 36201139 - 36201508
Alignment:
| Q |
21 |
accatgaagatgatacattacaatcaggactgtttgccgctctttcatcttagcaaaaagaagatcagctctttctgcagttatcattcttttactatta |
120 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||| |||| |||||||||||| ||| ||||| |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
36201139 |
accatgaagatcatacagtacaactaggactgtttgcagctccttcatcttagcacaaataagatgagctctatctgcagttgtcattcttttactatta |
36201238 |
T |
|
| Q |
121 |
ccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgtttgaatctttgtaatgtctg |
220 |
Q |
| |
|
||||||| | |||||| ||||||| ||| | | |||| ||||||||||||||||||||||||||| ||||| | |||||||||||| ||||||||| |
|
|
| T |
36201239 |
ccaaaacacatgcaacaagttgattttgctgcctccgtcatatcattaaaattgagacctattgcatcaccaatctgtgtttgaatcttattaatgtctg |
36201338 |
T |
|
| Q |
221 |
gcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgactcnnnnnnnngg |
320 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||||||||| | ||||| |||| |||||||||||||||| || | |||||| || ||||| || |
|
|
| T |
36201339 |
gcttcttggtcacagttgctgtgacagtcttttggaacaattgatc--tctcagctcttcttatagctgcttttacagaatacttgactcttctatctgg |
36201436 |
T |
|
| Q |
321 |
cccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaacctta |
393 |
Q |
| |
|
||| |||||| ||||||| || || ||||| |||||| |||| |||| |||||| ||||||||||||||| |
|
|
| T |
36201437 |
cccagataatctgattatacttcct-cttggcatctcactcttactgcatccataatctgttctttaacctta |
36201508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 190 - 394
Target Start/End: Original strand, 36214838 - 36215042
Alignment:
| Q |
190 |
ccaatttctgtttgaatctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctg |
289 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| |||| |||||||||||||||| |
|
|
| T |
36214838 |
ccaatttgtgtttgaatctttgtaatgtctggcttctttgtcacagttgctgtgacaatcttttggaacaattgatctctctcagctcttcttatagctg |
36214937 |
T |
|
| Q |
290 |
tttgtgcagaatgctcgactcnnnnnnnnggcccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaac |
389 |
Q |
| |
|
||| | ||||||||| |||| ||||||||||||||||||||| ||| || ||||||||||| |||| ||||||| |||| ||||||||||| |
|
|
| T |
36214938 |
tttttacagaatgcttgactttttcatctggcccgcataatccgattatactttatctctggtctctcactcttaatgcactcgtaatctgttctttaac |
36215037 |
T |
|
| Q |
390 |
cttat |
394 |
Q |
| |
|
|||| |
|
|
| T |
36215038 |
attat |
36215042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 36188630 - 36188749
Alignment:
| Q |
1 |
atctctcttaaattgagtcgaccatgaagatgatacattacaatcaggactgtttgccgctctttcatcttagcaaaaagaagatcagctctttctgcag |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36188630 |
atctctcctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcag |
36188729 |
T |
|
| Q |
101 |
ttatcattcttttactatta |
120 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
36188730 |
ttatcattcttttactatta |
36188749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 7 - 390
Target Start/End: Original strand, 36202510 - 36202893
Alignment:
| Q |
7 |
cttaaattgagtcgaccatgaagatgatacattacaatcaggactgtttgccgctctttcatcttagcaaaaagaagatcagctctttctgcagttatca |
106 |
Q |
| |
|
||||||| |||| |||||| |||| ||||||||||| |||||||||||| |||| |||||||||||| | || ||| |||||||||||||||| | | |
|
|
| T |
36202510 |
cttaaatcaagtctaccatggagatcatacattacaactaggactgtttgcagctccttcatcttagcacacagtagaagagctctttctgcagttctta |
36202609 |
T |
|
| Q |
107 |
ttcttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgtttgaat |
206 |
Q |
| |
|
||||||| ||||||| || | |||||| | |||| | |||| || ||||||||| |||||| |||| |||||||| ||||||| ||||||||| |
|
|
| T |
36202610 |
ttcttttgttattaccgtaagacatgcaacaggatgattcagctagatcaatcttatcatcaaaattcagacatattgcatcaccaatttgtgtttgaat |
36202709 |
T |
|
| Q |
207 |
ctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtg-cagaatgctc |
305 |
Q |
| |
|
|| |||||||||||||||||| ||||| |||| |||||||||||||| |||| | |||||| |||| | |||||| ||| | | ||||| ||||| || |
|
|
| T |
36202710 |
ctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattgatctctctcagatcttctcataac-ggttgtgacagaagcctt |
36202808 |
T |
|
| Q |
306 |
gactcnnnnnnnnggcccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaacc |
390 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||| || || |||||| |
|
|
| T |
36202809 |
gactctttcatctggcccgcataatccaattatgttttctccttggtctctcactcttagtgcatccataatctggtccttaacc |
36202893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 354
Target Start/End: Original strand, 36207991 - 36208329
Alignment:
| Q |
16 |
agtcgaccatgaagatgatacattacaatcaggactgtttgccgctctttcatcttagcaaaaagaagatcagctctttctgcagttatcattcttttac |
115 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| || ||||||||| | | || ||||||||| | |||||| |||||||||||||||| |||||||||| |
|
|
| T |
36207991 |
agtctaccatgaagatcatacagtacaactagtactgtttgcagtttctttatcttagcacacagaagaagagctctttctgcagttgtcattcttttgt |
36208090 |
T |
|
| Q |
116 |
tattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgtttgaatctttgtaat |
215 |
Q |
| |
|
|||||||| ||| | ||||| || || | | | || || ||||||||| |||||| |||||||||||| | ||||| | |||||||||||| |||| |
|
|
| T |
36208091 |
tattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattcagacctattgcaataccaatctgtgtttgaatcttgctaat |
36208190 |
T |
|
| Q |
216 |
gtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgactcnnnnn |
315 |
Q |
| |
|
|||||| ||||| |||||||||| ||||||||||||||||||| | |||||| |||| ||| ||||| ||| ||||| ||||||||| |||| |
|
|
| T |
36208191 |
gtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgatctctctcagcttttcttctagatgttttaacagaatgcttgactatttta |
36208290 |
T |
|
| Q |
316 |
nnnggcccgcataatccgattatattttctccttggtct |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
36208291 |
tctggcccgcataatccgattatattttctccttggtct |
36208329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 16 - 354
Target Start/End: Original strand, 36184807 - 36185146
Alignment:
| Q |
16 |
agtcgaccatgaagatgatacattacaatcaggactgtttgccgctctttcatcttagcaaaaagaagatcagctctttctgcagttatcattcttttac |
115 |
Q |
| |
|
|||| ||||||||||| | ||| ||||| || ||||||||| | || || |||||||| | |||||| |||||||||||||||| |||||||||| |
|
|
| T |
36184807 |
agtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaagagctctttctgcagttgtcattcttttgt |
36184906 |
T |
|
| Q |
116 |
tattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgtttgaatctttgtaat |
215 |
Q |
| |
|
|||||||| ||| | ||||| || || | | | || || ||||||||| |||||| |||||||||||| | ||||| | |||||||||||| |||| |
|
|
| T |
36184907 |
tattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattcagacctattgcaataccaatctgtgtttgaatcttgctaat |
36185006 |
T |
|
| Q |
216 |
gtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgactcnnnnn |
315 |
Q |
| |
|
|||||| ||||| |||||||||| ||||||||||||||||||| | |||||| |||| ||| ||||| ||| ||||| ||||||||| |||| |
|
|
| T |
36185007 |
gtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgatctctctcagcttttcttctagatgttttaacagaatgcttgactatttta |
36185106 |
T |
|
| Q |
316 |
nnngg-cccgcataatccgattatattttctccttggtct |
354 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36185107 |
tctggccccgcataatccgattatattttctccttggtct |
36185146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 36199103 - 36199363
Alignment:
| Q |
7 |
cttaaattgagtcgaccatgaagatgatacattacaatcaggactgtttgccgctctttcatcttagcaaaaagaagatcagctctttctgcagttatca |
106 |
Q |
| |
|
||||||| |||| ||||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||| | |||||| ||||||||||| |||| ||| |
|
|
| T |
36199103 |
cttaaatcaagtctaccataaagatcatacactacaactaggactgtttgcagctctttcatcttagcacacagaagaagagctctttctgtagttgtca |
36199202 |
T |
|
| Q |
107 |
ttcttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattgccaatttctgtttgaat |
206 |
Q |
| |
|
||||||| ||||| |||||| | |||||| ||| ||| | |||| || ||| |||||| |||||| ||||||||||||| || ||| ||||||| |
|
|
| T |
36199203 |
atcttttattattaacaaaacacatgcaacaagtagattcagctatatctgtcgtatcatcaaaattcagacctattgcatccccgattagtgtttga-- |
36199300 |
T |
|
| Q |
207 |
ctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttat |
284 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| | |||||| |||| ||||||||||| |
|
|
| T |
36199301 |
---------------catctttgtcacagttgttgtgacaatcttttggaacaattgatctctctcggctcttcttat |
36199363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 36183542 - 36183651
Alignment:
| Q |
168 |
aaaattgagacctattgcattgccaatttctgtttgaatctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatct |
267 |
Q |
| |
|
||||||||||||||||||| | ||||||| |||| |||||| ||||||||| |||||| ||||||||||| | ||| |||||||||||| | |||||| |
|
|
| T |
36183542 |
aaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgatct |
36183641 |
T |
|
| Q |
268 |
ttctctgctc |
277 |
Q |
| |
|
|||| |||| |
|
|
| T |
36183642 |
ctctcagctc |
36183651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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