View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13768_low_1 (Length: 695)
Name: NF13768_low_1
Description: NF13768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13768_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Complemental strand, 33499248 - 33498674
Alignment:
| Q |
1 |
tcatacggaatgaaaagacaagttttatgatcaaaattttaagcgatcctcgtcataatttctaaagctgcttgcttgtaagtttcctccatcgagtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499248 |
tcatacggaatgaaaagacaagttttatgatcaaaattttaagcgatcctcgtcataatttctaaagctgcttgcttgtaagtttcctccatcgagtttg |
33499149 |
T |
|
| Q |
101 |
cgccaagtgaagcttgttttgcctgcaaaatcaacacaattcaattgagctattcgcactcacactactcaagagaagagaaggtttgaaacttacatgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499148 |
cgccaagtgaagcttgttttgcctgcaaaatcaacacaattcaattgagctattcgctctcacactactcaagagaagagaaggtttgaaacttacatgg |
33499049 |
T |
|
| Q |
201 |
gccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgtttctctaacaccaaagcaattgtggtcaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33499048 |
gccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgtttctccaacaccaaagcaattgtggtcaaga |
33498949 |
T |
|
| Q |
301 |
gaccaggcttcttagttgcacaaatgcaaaattgtgcttcaccaccacatatgttcaacacaacattttgagaagaccatgtctgaaaacctacttgttg |
400 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33498948 |
gaccaggcttcttagttgaacaaatgcaaaattgtgcttcaccaccacatatgttcaacacaacattttgagaagaccatgtttgaaaacctacttgttg |
33498849 |
T |
|
| Q |
401 |
tggtggagatattgaaaatgcatttgaaggatttgaagttacacttgcattagacaagttattattataacttgaggatccttgatcagctaagaatgct |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33498848 |
tggtggagatattgaaaatgcatttgaaggatttgaagttacaattgcattagacaagttattattataacttgaggatccttgatcagctaagaatgct |
33498749 |
T |
|
| Q |
501 |
tcccttgattcatagggatgccactgtgagttgatcacagatgactcactccctaatggggatacagatttgagc |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
33498748 |
tcccttgattcatagggatgccactgtgagttgatcacagatgactcactcccaagtggggatacagatttgagc |
33498674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 171 - 575
Target Start/End: Complemental strand, 33485867 - 33485463
Alignment:
| Q |
171 |
aagagaagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgtt |
270 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33485867 |
aagaggagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgtt |
33485768 |
T |
|
| Q |
271 |
tctctaacaccaaagcaattgtggtcaagagaccaggcttcttagttgcacaaatgcaaaattgtgcttcaccaccacatatgttcaacacaacattttg |
370 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33485767 |
tctccaacaccaaagcaattgtggtcaagagaccaggcttcttagttgaacaaatgcaaaattgtgcttcaccaccacatatgttcaacacaacattttg |
33485668 |
T |
|
| Q |
371 |
agaagaccatgtctgaaaacctacttgttgtggtggagatattgaaaatgcatttgaaggatttgaagttacacttgcattagacaagttattattataa |
470 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33485667 |
agaagaccatgtttgaaaacctacttgttgtggtggagatattgaaaatgcatttgaaggatttgaagttacaattgcattagacaagttattattataa |
33485568 |
T |
|
| Q |
471 |
cttgaggatccttgatcagctaagaatgcttcccttgattcatagggatgccactgtgagttgatcacagatgactcactccctaatggggatacagatt |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
33485567 |
cttgaggatccttgatcagctaagaatgcttcccttgattcatagggatgccactgtgagttgatcacagatgactcactcccaagtggggatacagatt |
33485468 |
T |
|
| Q |
571 |
tgagc |
575 |
Q |
| |
|
||||| |
|
|
| T |
33485467 |
tgagc |
33485463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 33486212 - 33486058
Alignment:
| Q |
20 |
aagttttatgatcaaaattttaagcgatcctcgtcataatttctaaagctgcttgcttgtaagtttcctccatcgagtttgcgccaagtgaagcttgttt |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||| | ||||||||||| ||| || |||||||| ||||||| ||| || |||||| || ||||||||||||| |
|
|
| T |
33486212 |
aagttttatgatcaaaattctaagcgatccacatcataatttctccagccgcatgcttgtatgtttccttcattgaatttgcgtcatgtgaagcttgttt |
33486113 |
T |
|
| Q |
120 |
tgcctgcaaaatcaacacaattcaattgagctattcgcactcacactactcaaga |
174 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
33486112 |
tgcctgcaaaattaagacaattcaattgagctattcacactcgtactactcaaga |
33486058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 636 - 684
Target Start/End: Complemental strand, 33498613 - 33498565
Alignment:
| Q |
636 |
actgctgcatccacaatggttgatttatcagcctgtaaaatatcaaaat |
684 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33498613 |
actgctgcatccacaatggttgatttatcagcctgtaaaatatcaaaat |
33498565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 638 - 682
Target Start/End: Complemental strand, 33485400 - 33485356
Alignment:
| Q |
638 |
tgctgcatccacaatggttgatttatcagcctgtaaaatatcaaa |
682 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33485400 |
tgctgcatctacaatggttgatttatcagcctgtaaaatatcaaa |
33485356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University