View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13768_low_2 (Length: 556)

Name: NF13768_low_2
Description: NF13768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13768_low_2
NF13768_low_2
[»] chr3 (1 HSPs)
chr3 (19-517)||(43814690-43815187)
[»] chr8 (13 HSPs)
chr8 (19-156)||(29285721-29285858)
chr8 (27-155)||(29245663-29245791)
chr8 (19-129)||(29357353-29357463)
chr8 (45-165)||(29311057-29311177)
chr8 (27-135)||(29363890-29363998)
chr8 (52-158)||(29234207-29234313)
chr8 (38-128)||(29340528-29340618)
chr8 (42-158)||(29215006-29215122)
chr8 (43-127)||(29317572-29317656)
chr8 (25-129)||(29253972-29254076)
chr8 (34-105)||(29223760-29223831)
chr8 (395-468)||(29234416-29234488)
chr8 (399-463)||(29341639-29341703)
[»] chr2 (3 HSPs)
chr2 (43-158)||(30931045-30931160)
chr2 (34-158)||(30919558-30919682)
chr2 (42-158)||(30910110-30910226)
[»] chr5 (1 HSPs)
chr5 (52-158)||(14497538-14497644)


Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 19 - 517
Target Start/End: Complemental strand, 43815187 - 43814690
Alignment:
Q  19 caaatagataatttaagtgacatctttcaattgtggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagaca 118  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43815187 caaatagataatttaagtgacatctttcaactgtggagtttatccggtgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagaca 43815088  T
Q  119 tattaagagctggctctttaaacagatttggaagaaaattcatcgatgcaagcaatggccatgaagtatgtacttgtagaaactcggttttttcgtttat 218  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43815087 tattaagagctggctctttaaacagatttgaaagaaaattcaccgatgcaagcaatggccatgaagtatgtacttgtagaaactcgattttttcgtttat 43814988  T
Q  219 caagaattcagtttggctcaatatcaggggttcatattagacaaacttatttctttaaagtgataattttgtgagatcattatccttttttcatttaaag 318  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43814987 caagaattcagtttggctcaatattaggg-ttcatattagacaaacttatttctttaaagtgataattttgtgagatcattatccttttttcatttaaag 43814889  T
Q  319 tgatcaatgagtttcatggcccctatttaaattattgtttcatcatgcacatataagcaagagtctatcttttgaattcatttatttatatctttgctcc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43814888 tgatcaatgagtttcatggcccctatttaaattattgtttcatcatgcacatataagcaagagtctatcttttgaattcatttatttatatctttgctcc 43814789  T
Q  419 aacttatttttatcttctatagcaaaaaacttaaacacaaaccaacattaaacttatgctattttcaaaattaaataacatatgggttcttcttatatt 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43814788 aacttatttttatcttctatagcaaaaaacttaaacacaaaccaacattaaacttatgctattttcaaaattaaataacatatgggttcttcttatatt 43814690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 29285721 - 29285858
Alignment:
Q  19 caaatagataatttaagtgacatctttcaattgtggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagaca 118  Q
    |||||| ||||||| |||||| ||||||||| |||||| ||||| | ||||||||||||||| || ||||||||||||||||||| ||| ||| ||||||    
T  29285721 caaataaataatttgagtgacttctttcaatcgtggagtttatctggtgaatcatgtcctgatggaacaattccaattagaagaataaccgaagaagaca 29285820  T
Q  119 tattaagagctggctctttaaacagatttggaagaaaa 156  Q
    ||||||||| || |||| | | ||||||||||||||||    
T  29285821 tattaagagttgactctattagcagatttggaagaaaa 29285858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 29245663 - 29245791
Alignment:
Q  27 taatttaagtgacatctttcaattgtggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagacatattaaga 126  Q
    |||||| ||||||||||||||||||||||| || || | |||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | ||||    
T  29245663 taatttgagtgacatctttcaattgtggagtttgtctggtgaatcatgtcctgaaggaacaattccaattagaagaacaacagaagaagacatctcaaga 29245762  T
Q  127 gctggctctttaaacagatttggaagaaa 155  Q
    ||||| ||| |  | || |||||||||||    
T  29245763 gctggatctattgatagttttggaagaaa 29245791  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 29357353 - 29357463
Alignment:
Q  19 caaatagataatttaagtgacatctttcaattgtggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagaca 118  Q
    |||||||||||| | |||||||| ||||||||||||||||| || | ||||||||| |||||||| ||||||||||||||||||  |||||||||||||     
T  29357353 caaatagataatatgagtgacatatttcaattgtggagcttgtctggtgaatcatgccctgaaggaacaattccaattagaagagtaacagaacaagact 29357452  T
Q  119 tattaagagct 129  Q
    | |||||||||    
T  29357453 tgttaagagct 29357463  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 29311057 - 29311177
Alignment:
Q  45 tcaattgtggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagacatattaagagctggctctttaaacaga 144  Q
    |||||||||||| || || | |||||||||||||||||| ||||||||||||||||||| ||| ||||||||| | |||||||||| |||| | | |       
T  29311057 tcaattgtggagattgtctggtgaatcatgtcctgaaggaacaattccaattagaagaataacggaacaagacttgttaagagctgactctattagccat 29311156  T
Q  145 tttggaagaaaattcatcgat 165  Q
    ||||||||||||| |||||||    
T  29311157 tttggaagaaaatacatcgat 29311177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 29363890 - 29363998
Alignment:
Q  27 taatttaagtgacatctttcaattgtggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagacatattaaga 126  Q
    |||||| ||||||| ||||||||||||||| ||||| | |||||| |||||||| || ||||||||| |||||||||  |||||||||||| | ||||||    
T  29363890 taattttagtgacaactttcaattgtggagtttatcgggtgaatcttgtcctgatggaacaattccagttagaagaattacagaacaagaccttttaaga 29363989  T
Q  127 gctggctct 135  Q
    |||| ||||    
T  29363990 gctgactct 29363998  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 29234207 - 29234313
Alignment:
Q  52 tggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagacatattaagagctggctctttaaacagatttggaa 151  Q
    ||||||||||  | |||||||||||| ||||   ||||||||||| ||||||||| ||| ||||||||||||||||| |||||| | | || ||||||||    
T  29234207 tggagcttatatggtgaatcatgtcccgaagaatcaattccaattggaagaacaaaagagcaagacatattaagagccggctctattagcaaatttggaa 29234306  T
Q  152 gaaaatt 158  Q
    |||||||    
T  29234307 gaaaatt 29234313  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 29340528 - 29340618
Alignment:
Q  38 acatctttcaattgtggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagacatattaagagc 128  Q
    |||| ||||||||||||| ||| || | |||||||||||| ||||| ||||||||| ||||||||||||| ||||||||| | ||||||||    
T  29340528 acatatttcaattgtggaccttgtctggtgaatcatgtcccgaaggaacaattccagttagaagaacaaccgaacaagacttgttaagagc 29340618  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 29215122 - 29215006
Alignment:
Q  42 ctttcaattgtggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagacatattaagagctggctctttaaac 141  Q
    ||||||||||||||| || || | |||||||||||| ||||| |||||||| |||||||||| || ||||   || || ||||||||| ||||| | |||    
T  29215122 ctttcaattgtggagtttttcaggtgaatcatgtccagaaggaacaattccgattagaagaataaaagaaggtgatatgttaagagcttgctctattaac 29215023  T
Q  142 agatttggaagaaaatt 158  Q
    | |||||||||||||||    
T  29215022 acatttggaagaaaatt 29215006  T

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Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 29317572 - 29317656
Alignment:
Q  43 tttcaattgtggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagacatattaagag 127  Q
    ||||||||||||||||| || | |||||||||||| || || ||||||||| ||||||||| ||||||||||||| | |||||||    
T  29317572 tttcaattgtggagcttgtctggtgaatcatgtcccgatggaacaattccagttagaagaataacagaacaagacgtgttaagag 29317656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 29253972 - 29254076
Alignment:
Q  25 gataatttaagtgacatctttcaattgtggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagacatattaa 124  Q
    |||| ||| ||||||| |||||||||||||| |||| | ||||||||||||||    || ||||| |||||||||||||||| | || |||| || ||||    
T  29253972 gatattttgagtgacaactttcaattgtggaacttacctgatgaatcatgtccgattggaacaatcccaattagaagaacaaaaaaagaagatatcttaa 29254071  T
Q  125 gagct 129  Q
    |||||    
T  29254072 gagct 29254076  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 29223760 - 29223831
Alignment:
Q  34 agtgacatctttcaattgtggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaaca 105  Q
    ||||||| ||||||||||||||||||||| | |||||||||||| ||||  || ||| |||||||| |||||    
T  29223760 agtgacaactttcaattgtggagcttatctggtgaatcatgtccagaagaaacgattgcaattagacgaaca 29223831  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 395 - 468
Target Start/End: Original strand, 29234416 - 29234488
Alignment:
Q  395 ttcatttatttatatctttgctccaacttatttttatcttctatagcaaaaaacttaaacacaaaccaacatta 468  Q
    |||||||||||| ||||||||||  ||| |||||||||||||| | ||| |||||||| |||||||||| ||||    
T  29234416 ttcatttatttaaatctttgctctgact-atttttatcttctaaaacaagaaacttaaccacaaaccaatatta 29234488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 463
Target Start/End: Original strand, 29341639 - 29341703
Alignment:
Q  399 tttatttatatctttgctccaacttatttttatcttctatagcaaaaaacttaaacacaaaccaa 463  Q
    |||||||||||||||| |||||||  || |||| ||||||||||| ||| |||||||| ||||||    
T  29341639 tttatttatatctttgatccaactgtttcttattttctatagcaagaaagttaaacaccaaccaa 29341703  T

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Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 30931160 - 30931045
Alignment:
Q  43 tttcaattgtggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagacatattaagagctggctctttaaaca 142  Q
    |||||||||||||||||||  |||||||||||||| ||||| |||||||||||||||||| ||| |||| ||||||||||||||||| ||||| |  |||    
T  30931160 tttcaattgtggagcttatatgatgaatcatgtccagaaggaacaattccaattagaagagcaaaagaagaagacatattaagagctagctctattgaca 30931061  T
Q  143 gatttggaagaaaatt 158  Q
      ||||||||||||||    
T  30931060 cgtttggaagaaaatt 30931045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 30919682 - 30919558
Alignment:
Q  34 agtgacatctttcaattgtggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagacatattaagagctggct 133  Q
    ||||||| ||||||||| ||||||||||| |  ||||||||||| |||||  |  |||||||||||||||||| |||| ||||||||||||||||| |||    
T  30919682 agtgacaactttcaattatggagcttatctggcgaatcatgtccagaaggatctgttccaattagaagaacaaaagaagaagacatattaagagctagct 30919583  T
Q  134 ctttaaacagatttggaagaaaatt 158  Q
    || | ||||  ||||||||||||||    
T  30919582 ctattaacacgtttggaagaaaatt 30919558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 30910226 - 30910110
Alignment:
Q  42 ctttcaattgtggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagacatattaagagctggctctttaaac 141  Q
    ||||||||||||||| ||||| | |||||||||| | ||||| |||||||||||||||||||||| | || | || ||||||||||||  |||| | |||    
T  30910226 ctttcaattgtggagtttatcaggtgaatcatgttcagaaggaacaattccaattagaagaacaaaaaaagaggatatattaagagctaactctgttaac 30910127  T
Q  142 agatttggaagaaaatt 158  Q
    |  ||||||||||||||    
T  30910126 acgtttggaagaaaatt 30910110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 14497644 - 14497538
Alignment:
Q  52 tggagcttatccgatgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagacatattaagagctggctctttaaacagatttggaa 151  Q
    |||||||| || | |||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| ||  | ||| | |||| ||||||||    
T  14497644 tggagcttgtcgggtgaatcatgtccagaaggaacaattccgattagaagaacaacagaacaagacatgttaagggcaagttctatcaacacatttggaa 14497545  T
Q  152 gaaaatt 158  Q
    |||||||    
T  14497544 gaaaatt 14497538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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