View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13768_low_3 (Length: 290)
Name: NF13768_low_3
Description: NF13768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13768_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 2 - 274
Target Start/End: Complemental strand, 16790373 - 16790101
Alignment:
| Q |
2 |
atgaagagatataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatca |
101 |
Q |
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| T |
16790373 |
atgaagagatataacttgcaggaataagcaaccgcaacggtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaatattca |
16790274 |
T |
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| Q |
102 |
atgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgat |
201 |
Q |
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| T |
16790273 |
atgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaaggttctgatcgatagtcactgcattgtacatgat |
16790174 |
T |
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| Q |
202 |
tttaacaagcgacccttcactatgttccgtctctactcctagtgcactttcaacattttccttttcagcaata |
274 |
Q |
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| T |
16790173 |
tttaacaattgatccttcactatgttcggtcgctactcctagcgcactttcaacattttccttttcagcaata |
16790101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 4 - 270
Target Start/End: Complemental strand, 16791776 - 16791511
Alignment:
| Q |
4 |
gaagagatataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaat |
103 |
Q |
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| T |
16791776 |
gaagagatataacttgcaggaataagcaacctcaacggtttgatcaatgactacagaatcaatata-ataatcaatgagatgaaaatcaaaataatcaat |
16791678 |
T |
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| Q |
104 |
gcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattt |
203 |
Q |
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| T |
16791677 |
gcaaatagttgaaaatagaatataaaatcacttacctttttatcataagtgaagtgagatacatggttctgattgatagtcactgcattgtacatgattt |
16791578 |
T |
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| Q |
204 |
taacaagcgacccttcactatgttccgtctctactcctagtgcactttcaacattttccttttcagc |
270 |
Q |
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| T |
16791577 |
taatacgtgacccttcactttgttcgatggctactcctaatgcactttcaatattttccttttcagc |
16791511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 16616712 - 16616966
Alignment:
| Q |
12 |
ataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatag |
111 |
Q |
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| T |
16616712 |
ataactttcaggaataaacaaccgcagtggtttgatcaatgactacaaaaccaatatacatagtcgatgagatgaaaatcaaaatggtcaatgcaaataa |
16616811 |
T |
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| Q |
112 |
ttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaacaagc |
211 |
Q |
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| T |
16616812 |
ttcaaaacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgtacataattttcacaagt |
16616911 |
T |
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| Q |
212 |
gacccttcactatgttccgtctctactcctagtgcactttcaacattttcctttt |
266 |
Q |
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| T |
16616912 |
aatccttcactttgttcggcagctactccaactacactttcaacaatttcctttt |
16616966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 16628412 - 16628610
Alignment:
| Q |
12 |
ataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatag |
111 |
Q |
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|||||||||||||||||| ||||||| | | |||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||| ||||||| |
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| T |
16628412 |
ataacttgcaggaataagtaaccgcagcggattgatcaatgactgcagatgtaatattcatagtcaatgagataaaaatcaaaatgatcaacgcaaataa |
16628511 |
T |
|
| Q |
112 |
ttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaacaag |
210 |
Q |
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| T |
16628512 |
ttccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgcattgtacatgattttaacaag |
16628610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 16637293 - 16637491
Alignment:
| Q |
12 |
ataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatag |
111 |
Q |
| |
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|||||||||||||||||| ||||||| | | |||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||| ||||||| |
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| T |
16637293 |
ataacttgcaggaataagtaaccgcagcggattgatcaatgactgcagatgtaatattcatagtcaatgagataaaaatcaaaatgatcaacgcaaataa |
16637392 |
T |
|
| Q |
112 |
ttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaacaag |
210 |
Q |
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| T |
16637393 |
ttccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgcattgtacatgattttaacaag |
16637491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 16792352 - 16792549
Alignment:
| Q |
12 |
ataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatag |
111 |
Q |
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||||||| || |||| ||||||||| | ||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
16792352 |
ataacttacaagaatgagcaaccgccatggtttgatcaatga-tgcaaaacttatatacatagtcaatgaaatgaaaatcaaaataatcaatgtgaataa |
16792450 |
T |
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| Q |
112 |
ttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaacaag |
210 |
Q |
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||||||| | ||||||||| ||||||| ||||||||| || |||||||||||||| | | ||||||||||||| |||| ||||||||||||||||||| |
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| T |
16792451 |
ttgaaaacataatataaaatcatttacatttttatcagaaatgaagtgagatacatggctttgattgatagtcattgcaatgtacatgattttaacaag |
16792549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 16790439 - 16790637
Alignment:
| Q |
12 |
ataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatag |
111 |
Q |
| |
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||||||| || |||||||||||| ||| |||||||||||| |||| ||| || |||||||||||||| || ||||||||||||||||||| ||||| |
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| T |
16790439 |
ataacttacaagaataagcaaccacaatgatttgatcaatga-tgcaaaacttatttacatagtcaatgaaatcaaaatcaaaataatcaatgtgaatag |
16790537 |
T |
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| Q |
112 |
ttgaaaatagaatataaaaccatttaccttttt-atcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaacaag |
210 |
Q |
| |
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|| |||| | ||||||||| ||||||| ||||| |||| ||||||| ||||||||| | | ||||||||||||| |||||||||||||||||||||||| |
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| T |
16790538 |
ttcaaaagataatataaaatcatttacattttttatcagaagtgaaatgagatacatggctttgattgatagtcattgcattgtacatgattttaacaag |
16790637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 38877242 - 38877436
Alignment:
| Q |
12 |
ataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatag |
111 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||||||||||||||| ||||| ||||||||||| | ||||||| |||||||||||||| |||| ||||| |
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| T |
38877242 |
ataacttggaggaataagcaaccacaacggtttgatcaatgactgaagaacaaatatacatagcctatgagataaaaatcaaaataattaatgtgaatag |
38877341 |
T |
|
| Q |
112 |
ttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaa |
206 |
Q |
| |
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|| |||| |||||||||||||||| |||||||||||||| || |||||||||||||| | |||||| |||||||||||||||||||||||||||| |
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| T |
38877342 |
ttcaaaacagaatataaaaccattcacctttttatcatatgtcaagtgagatacaaggtcctgattcatagtcactgcattgtacatgattttaa |
38877436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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