View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13768_low_4 (Length: 261)
Name: NF13768_low_4
Description: NF13768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13768_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 40548652 - 40548411
Alignment:
| Q |
7 |
gaaagggtggaagaataagtaaagcatgaatataattcttatatgactctaacaactaaaagttcaagctaaattggttattaaagtatgacaagaaatc |
106 |
Q |
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| T |
40548652 |
gaaagggtggaagaataagtaaagcatgaatataattcttatatgactctaacaactaaaagttcaaactaaattggttattaaagtatgacaagaaatc |
40548553 |
T |
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| Q |
107 |
gtgatcacttctaatatgaaaatgatgatatacaatgatcagttagaagctaacttgtatttttgttgagaagaaatcaatagaattcagaatagacatg |
206 |
Q |
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| T |
40548552 |
gtgatcacttctaatatgaaaatgatgatatacaataatcagttagaagctaacttgtatttttgttgagaagaaatcaatagaattcagaatagacatg |
40548453 |
T |
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| Q |
207 |
gtagccccagcttttaagcaagcaattggttgttgtagtgat |
248 |
Q |
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| T |
40548452 |
gtagccccagcttttaagcaagcaattggttgttgtagtgat |
40548411 |
T |
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Back To:
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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 28779459 - 28779530
Alignment:
| Q |
169 |
ttgttgagaagaaatcaatagaattcagaatagacatggtagccccagcttttaagcaagcaattggttgtt |
240 |
Q |
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| T |
28779459 |
ttgttgagaagaaatcaatataattcagaacagccataattgcccctgcctgtaagcaagcaagtggttgtt |
28779530 |
T |
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