View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13769_high_2 (Length: 310)
Name: NF13769_high_2
Description: NF13769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13769_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 292
Target Start/End: Complemental strand, 20626808 - 20626532
Alignment:
| Q |
15 |
gatccgttaaaaaataatcacatgtgaatgtgatgaactctagtaataagagattatgattattttttccaatgcaaatgccacttaaattaagaattta |
114 |
Q |
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| T |
20626808 |
gatccgttaaaaaataatcacatgtgaatgtgatgaactctggtaataagagattatgattcttttttacaatgcaaatgccacttaaattgagaattta |
20626709 |
T |
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| Q |
115 |
tgttggacatgctcccttaaacactaacaataaagagnnnnnnnngatgaacgtgatagctacatattagcttcaaatttgactcttcaccataaaaggg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20626708 |
tgttggacatgctcccttaaacactaacaataaagagaaaaaaaagatgaacgtgatagctacatattagcttcaaatttgactcttcaccataaaaggg |
20626609 |
T |
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| Q |
215 |
aagcttcaattgatcagaaaagaaaaagaagattctccaacagtaaacaaaatgcctcattttgattggaatggtaaa |
292 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20626608 |
aagcttcaattgatcag-aaggaaaaagaagattctccaacagtaaacaagatgcctcattttgattggaatggtaaa |
20626532 |
T |
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