View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13769_high_4 (Length: 218)
Name: NF13769_high_4
Description: NF13769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13769_high_4 |
 | |
|
| [»] scaffold0299 (2 HSPs) |
| | |
|
| [»] scaffold0758 (1 HSPs) |
| | |
|
| [»] scaffold0161 (3 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
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| [»] scaffold0022 (2 HSPs) |
| | |
|
| [»] scaffold0453 (1 HSPs) |
| | |
|
| [»] scaffold0231 (1 HSPs) |
| | |
|
| [»] scaffold0116 (1 HSPs) |
| | |
|
| [»] scaffold0359 (1 HSPs) |
| | |
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| [»] scaffold0317 (1 HSPs) |
| | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
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| [»] scaffold0193 (1 HSPs) |
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| [»] scaffold0083 (1 HSPs) |
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| [»] scaffold0772 (1 HSPs) |
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| [»] scaffold0017 (2 HSPs) |
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Alignment Details
Target: scaffold0299 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 15575 - 15778
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15575 |
ctttaagtgattcaataagttcttttctaggaattttagaggatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagc |
15674 |
T |
|
| Q |
101 |
tactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactctgcttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15675 |
tactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcattctctaaatcttcccaggtggccatcagactctgcttg |
15774 |
T |
|
| Q |
201 |
atct |
204 |
Q |
| |
|
|||| |
|
|
| T |
15775 |
atct |
15778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 21146 - 21349
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21146 |
ctttaagtgattcaataagttcttttctgggaattttagagtatgcctcatttttatattcagagtctagttcaggtttagaatctaaagccaccgtagc |
21245 |
T |
|
| Q |
101 |
tactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactctgcttg |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21246 |
tactaaccccacaaccacatttgcttcatcctgaacatcatccttatcagaccctgactcattctctaaatcttcccaggtggccatcagactctgcttg |
21345 |
T |
|
| Q |
201 |
atct |
204 |
Q |
| |
|
|||| |
|
|
| T |
21346 |
atct |
21349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 6755993 - 6755849
Alignment:
| Q |
2 |
tttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagct |
101 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||| |||| ||||||| |||||| |
|
|
| T |
6755993 |
tttaagtgattcaataagttcttttctgagaattttagagtatgcctcattttcatcttcagagtttggttcaggtttaacatctgaagccactgtagct |
6755894 |
T |
|
| Q |
102 |
actaaccccacaaccacatttacttcatcctcaacatcatcctta |
146 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
6755893 |
actaaccccacaaccacatttgcttcatccttagcatcatcctta |
6755849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 6772793 - 6772688
Alignment:
| Q |
2 |
tttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagct |
101 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| || | |||||||| ||||| |
|
|
| T |
6772793 |
tttaagtgattcaataagatcttttctgggaattttagagtatgcctcattttcatcttcagagtctggttcaggtttagcatttgaagccaccatagct |
6772694 |
T |
|
| Q |
102 |
actaac |
107 |
Q |
| |
|
|||||| |
|
|
| T |
6772693 |
actaac |
6772688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 17447920 - 17447722
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagc |
100 |
Q |
| |
|
|||||||||| ||||||||||||| ||| ||||||||||| ||| |||||||| || ||||||||| || |||| | ||| ||| ||| ||||| |
|
|
| T |
17447920 |
ctttaagtgaatcaataagttcttctcttggaattttagaatatatctcatttttatcctcagagtctgattttggttcaacttctgaagtcactgtagc |
17447821 |
T |
|
| Q |
101 |
tactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactctgctt |
199 |
Q |
| |
|
||||||||| ||| | ||||| ||||||| ||||||||||||||||| ||||||| || | || ||||||||||| |||||||| | ||||||||| |
|
|
| T |
17447820 |
tactaacccaacacctacattgacttcatttccaacatcatccttatcaaaccctgattcactatccaaatcttcccatgtggccattaaactctgctt |
17447722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 19447957 - 19448143
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagc |
100 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| || |||| || ||| | | || ||||| |
|
|
| T |
19447957 |
ctttaagagactcaataagttcttttctgggaattttagagtatacctcattttcattttcagagtctgagtctggttcagcttctgatgtcagtgtagc |
19448056 |
T |
|
| Q |
101 |
tactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccat |
187 |
Q |
| |
|
||||||||||||||| |||||| ||||||| || | || ||||| ||||||| || || | ||||||||||| ||||| ||||| |
|
|
| T |
19448057 |
tactaaccccacaactacatttgcttcatcttctgcttcttccttttcagaccgagattcactgtctaaatcttcgcaggttgccat |
19448143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 13138656 - 13138455
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagc |
100 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||| ||| |||||||||||| ||||||||| ||||||| | ||| ||| ||| ||||| |
|
|
| T |
13138656 |
ctttaagtgaatcaataagttcatctctgggaattttagaatatacctcattttcatcctcagagtctgtatcaggttcaacttctgaagtcactgtagc |
13138557 |
T |
|
| Q |
101 |
tactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactctgcttg |
200 |
Q |
| |
|
|||| |||| || | |||||| |||||| || | ||||||||||||||| || | || | || |||||||||||||||||||||| |||||||||| |
|
|
| T |
13138556 |
tactgacccaactcctacatttgcttcatttccagcttcatccttatcagactctaattcactatccaaatcttcccaggtggccatcaaactctgcttg |
13138457 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
13138456 |
at |
13138455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 19873779 - 19873981
Alignment:
| Q |
2 |
tttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagct |
101 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||| ||| |||||||||||| ||||||| | ||| |||| || || ||| ||| ||||| |
|
|
| T |
19873779 |
tttaagtgaatcaataagttcttctctaggaattttagaatatacctcattttcatcctcagagtttgattctggttcagcttccaaagtcactatagct |
19873878 |
T |
|
| Q |
102 |
actaaccccacaaccacatttacttcatcctcaa-catcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactctgcttg |
200 |
Q |
| |
|
|||||||| ||||| |||||| |||||| ||||| |||||||| ||| ||||||| || | |||||||||||| |||||||||| | ||| ||||| |
|
|
| T |
19873879 |
actaacccaacaactacatttgcttcat-ctcaagtttcatccttgtcaaaccctgattcactatctaaatcttcctaggtggccattaaactttgctta |
19873977 |
T |
|
| Q |
201 |
atct |
204 |
Q |
| |
|
|||| |
|
|
| T |
19873978 |
atct |
19873981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26940281 - 26940346
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagt |
66 |
Q |
| |
|
||||||| || |||| |||||||| | | ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
26940281 |
ctttaagagactcaacaagttcttctatgggaattttagagtatacctcattttcatcttcagagt |
26940346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 16107304 - 16107101
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagc |
100 |
Q |
| |
|
||||||| || ||||||||||| ||| ||||| |||||||||||||||||||||| |||| ||||| ||| ||| | |||||||||||| |||| |
|
|
| T |
16107304 |
ctttaagagactcaataagttcagctcttggaatcttagagtatgcctcattttcatcttcatagtctgtatcaagttctgcatcttaagccactatagc |
16107205 |
T |
|
| Q |
101 |
tactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactctgcttg |
200 |
Q |
| |
|
||||||||||||| |||||||| |||||| ||| | ||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||| |
|
|
| T |
16107204 |
tactaaccccacatccacatttggttcatcttcagcttcatccttatcagaccctgactcattgtctaaatcttcccaagtagccatcagactctgcttg |
16107105 |
T |
|
| Q |
201 |
atct |
204 |
Q |
| |
|
|||| |
|
|
| T |
16107104 |
atct |
16107101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 16309936 - 16309781
Alignment:
| Q |
49 |
cattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagctactaaccccacaaccacatttacttcatcctcaacatcatccttatc |
148 |
Q |
| |
|
||||||||| || ||| | | ||||||||| || || | |||||| ||||||||||||||||||||||||||| |||||||||||||| ||| |||||| |
|
|
| T |
16309936 |
cattttcatctttagattatggttcaggttcagcatttgaagccattgtagctactaaccccacaaccacatttgcttcatcctcaacaccatgcttatc |
16309837 |
T |
|
| Q |
149 |
agaccctgactcgttctctaaatcttcccaggtggccatcagactctgcttgatct |
204 |
Q |
| |
|
||||||||| || || || |||||||| ||| ||||||||| |||||||||||||| |
|
|
| T |
16309836 |
agaccctgattcattatccaaatcttctcagatggccatcaaactctgcttgatct |
16309781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 12327143 - 12327027
Alignment:
| Q |
88 |
aagccaccgtagctactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccat |
187 |
Q |
| |
|
||||||| ||||| |||||||||| | || ||||| ||||||| ||||| ||||| ||||||||||||||||| || |||||||||||||| | ||||| |
|
|
| T |
12327143 |
aagccactgtagccactaaccccaaagccgcatttgcttcatcttcaacttcatctttatcagaccctgactcattttctaaatcttcccaaatagccat |
12327044 |
T |
|
| Q |
188 |
cagactctgcttgatct |
204 |
Q |
| |
|
|||||| ||||| |||| |
|
|
| T |
12327043 |
cagactttgcttaatct |
12327027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 16670417 - 16670225
Alignment:
| Q |
12 |
tcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagctactaacccca |
111 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||||| |||||||||||| |||||||||| ||||||| || ||| | | || |||||||||||||||| |
|
|
| T |
16670417 |
tcaacaagttcttctctgggaattttagagtatacctcattttcatcttcagagtctgagtcaggttcagcttctgatgtcagtgtagctactaacccca |
16670318 |
T |
|
| Q |
112 |
caaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactctgcttgatct |
204 |
Q |
| |
|
| | | |||| ||||||| |||| || ||||| |||||||| || || | |||||||||||| |||| ||||| | ||||| ||| |||| |
|
|
| T |
16670317 |
tagctaaatttgcttcatctccaacttcttccttttcagacccagattcactgtctaaatcttcctaggttgccattaaactcttcttaatct |
16670225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 17644785 - 17644593
Alignment:
| Q |
12 |
tcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagctactaacccca |
111 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||||| |||||||||||| |||||||||| ||||||| || ||| | | || |||||||||||||||| |
|
|
| T |
17644785 |
tcaacaagttcttctctgggaattttagagtatacctcattttcatcttcagagtctgagtcaggttcagcttctgatgtcagtgtagctactaacccca |
17644686 |
T |
|
| Q |
112 |
caaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactctgcttgatct |
204 |
Q |
| |
|
| | | |||| ||||||| |||| || ||||| |||||||| || || | |||||||||||| |||| ||||| | ||||| ||| |||| |
|
|
| T |
17644685 |
tagctaaatttgcttcatctccaacttcttccttttcagacccagattcactgtctaaatcttcctaggttgccattaaactcttcttaatct |
17644593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 13878019 - 13878082
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcaga |
64 |
Q |
| |
|
||||||| || ||||||||||||| ||||||||||||||| ||| |||||||||||| |||||| |
|
|
| T |
13878019 |
ctttaagagactcaataagttcttctctaggaattttagaatatacctcattttcatcttcaga |
13878082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 13029220 - 13029157
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcaga |
64 |
Q |
| |
|
||||||| || ||||||||||||| ||| | ||||||||||||| |||||||||||| |||||| |
|
|
| T |
13029220 |
ctttaagagactcaataagttcttctctggaaattttagagtatacctcattttcatcttcaga |
13029157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 13680223 - 13680284
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattca |
62 |
Q |
| |
|
||||||| || ||||| ||||||| ||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
13680223 |
ctttaagagactcaattagttcttctctaggaattttagaatatacctcattttcatcttca |
13680284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 24610897 - 24610698
Alignment:
| Q |
3 |
ttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagcta |
102 |
Q |
| |
|
|||||||||||| ||||||| | | | | ||||||| | ||| |||||||||||| |||||||| | |||||||| || |||| ||||||| ||||| | |
|
|
| T |
24610897 |
ttaagtgattcagtaagttcatctttggaaattttaaaatatacctcattttcatcttcagagtatgtttcaggttcagcatctgaagccactgtagcca |
24610798 |
T |
|
| Q |
103 |
ctaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactctgcttgat |
202 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||| || ||||||||||||||| || | || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
24610797 |
ctaacctcacaaccacatttgcttcatcttcaacattattcttatcagaccctgattcactatccaaatcttctcaggtggccatcagactctgcttgat |
24610698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 18697178 - 18696977
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| ||| |||||||||||| |||| ||||| ||||||| | ||| ||| ||| | ||| |
|
|
| T |
18697178 |
ctttaagtgattcaataagttcttctctgggaattttagaatatacctcattttcatcttcaaagtctgtatcaggttcaacttctgaagtcacagcagc |
18697079 |
T |
|
| Q |
101 |
tactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactctgcttg |
200 |
Q |
| |
|
||||||||| ||| | |||||| ||||||| ||| | ||||||||||||| |||| | || | || |||||||||| |||||||||||||||||| ||| |
|
|
| T |
18697078 |
tactaacccaacacctacatttgcttcatcttcagcttcatccttatcaggccctaattcactatccaaatcttccctggtggccatcagactctggttg |
18696979 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
18696978 |
at |
18696977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 20966477 - 20966679
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagc |
100 |
Q |
| |
|
||||||||||||| | |||||| | ||| ||||||||||| ||| |||| ||||||| |||||||| | |||||||| | |||| ||| | ||||| |
|
|
| T |
20966477 |
ctttaagtgattccacaagttcatctctgggaattttagaatatacctcgttttcatcttcagagtttgtttcaggttcaacatctaaagttat-gtagc |
20966575 |
T |
|
| Q |
101 |
tactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactctgcttg |
200 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||| |||||||||||||||||||| |||| || |||||||||||||| |||||||||| |||||||| | |
|
|
| T |
20966576 |
tactaaccccacaattacattagcttcatcttcagcatcatccttatcagaccctaactcattatctaaatcttcccaagtggccatcaaactctgctcg |
20966675 |
T |
|
| Q |
201 |
atct |
204 |
Q |
| |
|
|||| |
|
|
| T |
20966676 |
atct |
20966679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 21201252 - 21201196
Alignment:
| Q |
12 |
tcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtct |
68 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
21201252 |
tcaataagttcttctctaggaattttagagtataccttattttcatcttcagagtct |
21201196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 26782302 - 26782365
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcaga |
64 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||||| ||| |||||||||||| |||||| |
|
|
| T |
26782302 |
ctttaagagactcaataagttcttttctgagaattttagaatatacctcattttcatcttcaga |
26782365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 9344655 - 9344853
Alignment:
| Q |
6 |
agtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagctacta |
105 |
Q |
| |
|
||||||||||||||||||| | | ||||||||| | ||| |||||||||||| |||||| ||| |||||||| | |||| |||||| ||||||| || |
|
|
| T |
9344655 |
agtgattcaataagttcttctatgggaattttataatatacctcattttcatcttcagaatctgtttcaggttcatcatctgaagccattgtagctaata |
9344754 |
T |
|
| Q |
106 |
accccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactctgcttgatct |
204 |
Q |
| |
|
|||||| | |||||||| |||||||||| ||||| |||||| ||||||||| || | || |||||||| |||| | |||||||||||| |||||||| |
|
|
| T |
9344755 |
accccatagccacatttgattcatcctcagcatcagccttattagaccctgattcactatccaaatcttctcaggcgaccatcagactctacttgatct |
9344853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 23976576 - 23976460
Alignment:
| Q |
88 |
aagccaccgtagctactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccat |
187 |
Q |
| |
|
||||||| ||||| ||||| |||| | ||||||| |||||| ||| | ||||| || ||||||||||| || || |||| ||||||||| || ||||| |
|
|
| T |
23976576 |
aagccactgtagccactaatcccatagccacattagcttcattttcagcttcatctttctcagaccctgattcattgtctagatcttcccaagtagccat |
23976477 |
T |
|
| Q |
188 |
cagactctgcttgatct |
204 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
23976476 |
cagactctgcttgatct |
23976460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 21196892 - 21196825
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtct |
68 |
Q |
| |
|
||||||| || ||||||||||||||| | ||||||||||||||| |||||||||||| || ||||||| |
|
|
| T |
21196892 |
ctttaagagactcaataagttcttttttgggaattttagagtatacctcattttcatctttagagtct |
21196825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 18613294 - 18613359
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagt |
66 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||||||| ||||| |||||||||||| ||| |||| |
|
|
| T |
18613294 |
ctttaagagactcaataagttcttctctgggaattttaaagtatacctcattttcatcttctgagt |
18613359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17719753 - 17719816
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcaga |
64 |
Q |
| |
|
||||||| || ||||||||||||| ||| | ||||||||| ||| |||||||||||| |||||| |
|
|
| T |
17719753 |
ctttaagagactcaataagttcttctctggaaattttagattatacctcattttcatcttcaga |
17719816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0758 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0758
Description:
Target: scaffold0758; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 2319 - 2427
Alignment:
| Q |
96 |
gtagctactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactct |
195 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||| | | ||||||| |||||||||| |||||| || |||| |||||| || || ||||||||||||| |
|
|
| T |
2319 |
gtagctactaaccccatagccacatttacttcatctttagcatcatctttatcagaccttgactcattgtctagatcttctcaagtagccatcagactct |
2418 |
T |
|
| Q |
196 |
gcttgatct |
204 |
Q |
| |
|
| ||||||| |
|
|
| T |
2419 |
gtttgatct |
2427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 12299 - 12113
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagc |
100 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||||||||| ||| |||||||||||| ||||||||||| |||| || | ||| ||| ||| ||||| |
|
|
| T |
12299 |
ctttaagagactcaataagttcttctctgggaattttagaatatacctcattttcatcttcagagtctaagtcagattctgcttctgaagtcacagtagc |
12200 |
T |
|
| Q |
101 |
tactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccat |
187 |
Q |
| |
|
|||||||||| | | |||||||||||||| || | || ||||| |||||||| || || | | ||||||||||||||| ||||| |
|
|
| T |
12199 |
cactaaccccatagctacatttacttcatctccagcttcttccttttcagacccagattcactatttaaatcttcccaggttgccat |
12113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 16972 - 16786
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagc |
100 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||||||||| ||| |||||||||||| ||||||||||| |||| || | ||| ||| ||| ||||| |
|
|
| T |
16972 |
ctttaagagactcaataagttcttctctgggaattttagaatatacctcattttcatcttcagagtctaagtcagattctgcttctgaagtcacagtagc |
16873 |
T |
|
| Q |
101 |
tactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccat |
187 |
Q |
| |
|
|||||||||| | | |||||||||||||| || | || ||||| |||||||| || || | | ||||||||||||||| ||||| |
|
|
| T |
16872 |
cactaaccccatagctacatttacttcatctccagcttcttccttttcagacccagattcactatttaaatcttcccaggttgccat |
16786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 19910 - 19724
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagc |
100 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||||||||| ||| |||||||||||| ||||||||||| |||| || | ||| ||| ||| ||||| |
|
|
| T |
19910 |
ctttaagagactcaataagttcttctctgggaattttagaatatacctcattttcatcttcagagtctaagtcagattctgcttctgaagtcacagtagc |
19811 |
T |
|
| Q |
101 |
tactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccat |
187 |
Q |
| |
|
|||||||||| | | |||||||||||||| || | || ||||| |||||||| || || | | ||||||||||||||| ||||| |
|
|
| T |
19810 |
cactaaccccatagctacatttacttcatctccagcttcttccttttcagacccagattcactatttaaatcttcccaggttgccat |
19724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 3852 - 3737
Alignment:
| Q |
88 |
aagccaccgtagctactaaccccacaaccacatttacttcatcctcaacatcatcctt-atcagaccctgactcgttctctaaatcttcccaggtggcca |
186 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| ||||||| ||| | ||||| || ||||||| ||||||| || |||||||||||||| | |||| |
|
|
| T |
3852 |
aagccactgtagctactaaccccacagtcacatttgcttcatcttcagcttcatcttttatcagactctgactcattatctaaatcttcccaattagcca |
3753 |
T |
|
| Q |
187 |
tcagactctgcttgat |
202 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
3752 |
tcaaactctgcttgat |
3737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 157018 - 157147
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagc |
100 |
Q |
| |
|
||||||| || ||||||||||||||| ||||||||||||||||| |||||||||||| || ||||||| ||||||| || ||||| | | || || |
|
|
| T |
157018 |
ctttaagagactcaataagttcttttataggaattttagagtatacctcattttcatctttagagtctgagtcaggttcagcttcttatgtcggtgtggc |
157117 |
T |
|
| Q |
101 |
tactaaccccacaaccacatttacttcatc |
130 |
Q |
| |
|
||||||||||||||| | |||| ||||||| |
|
|
| T |
157118 |
tactaaccccacaactatatttgcttcatc |
157147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 133373 - 133436
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcaga |
64 |
Q |
| |
|
||||||| || ||||||||||||| ||||||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
133373 |
ctttaagagactcaataagttcttctctaggaattttagagtataccttattttcatcttcaga |
133436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 24304264 - 24304136
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtctagttcaggtttagaatcttaagccaccgtagc |
100 |
Q |
| |
|
|||||||||| ||||||||||||| ||| ||||||||||| |||| |||| |||||| |||||||||| ||||||||||| ||| ||| ||| |||| |
|
|
| T |
24304264 |
ctttaagtgaatcaataagttcttctctgggaattttagaatatgtctca-tttcatcttcagagtctgattcaggtttagcttctgaagtcactttagc |
24304166 |
T |
|
| Q |
101 |
tactaaccccacaaccacatttacttcatc |
130 |
Q |
| |
|
|||||||||| | | |||||| ||||||| |
|
|
| T |
24304165 |
cactaaccccatagctacatttgcttcatc |
24304136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 22677837 - 22677929
Alignment:
| Q |
83 |
atcttaagccaccgtagctactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttc |
175 |
Q |
| |
|
||||||||||| ||| ||||||| ||||||||||| ||| ||||||| ||||| ||||| || ||||||||||| || || |||| |||||| |
|
|
| T |
22677837 |
atcttaagccatagtatctactaatcccacaaccacgtttgcttcatcttcaacttcatctttctcagaccctgattcattgtctagatcttc |
22677929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 22463667 - 22463604
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcaga |
64 |
Q |
| |
|
||||||| || ||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
22463667 |
ctttaagagactcaataagttcttttataggaattttagagtatacctcattttcatcttcaga |
22463604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 19941108 - 19941310
Alignment:
| Q |
2 |
tttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtct-agttcaggtttagaatcttaagccaccgtagc |
100 |
Q |
| |
|
|||||| || ||||||||||||| ||| |||||||||| ||| |||||||||||| |||||||||| |||| ||| | | ||| ||| ||| |||| |
|
|
| T |
19941108 |
tttaagagactcaataagttcttctctcagaattttagaatatacctcattttcatcttcagagtctgagtt-aggatctgcttctaaagtcacagtagt |
19941206 |
T |
|
| Q |
101 |
tactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactctgcttg |
200 |
Q |
| |
|
||||||||||| | | |||||| ||||||| || | || ||||| |||||||| | || | ||||||||||||||||| ||||| | ||||| ||| |
|
|
| T |
19941207 |
tactaaccccatagctacatttgcttcatctccagcttcttccttttcagacccaaattcactatctaaatcttcccaggttgccattaaactcttctta |
19941306 |
T |
|
| Q |
201 |
atct |
204 |
Q |
| |
|
|||| |
|
|
| T |
19941307 |
atct |
19941310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 25164148 - 25164211
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcaga |
64 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||||||||| ||| | |||||||||| |||||| |
|
|
| T |
25164148 |
ctttaagagactcaataagttcttctctgggaattttagaatatacgtcattttcatcttcaga |
25164211 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0453 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0453
Description:
Target: scaffold0453; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 542 - 475
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtct |
68 |
Q |
| |
|
||||||| || | ||||||||||||||| ||||||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
542 |
ctttaagagactaaataagttcttttctgggaatttcagagtatacctcattttcatcttcagagtct |
475 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 20586 - 20530
Alignment:
| Q |
12 |
tcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtct |
68 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| ||||||||| || |||||||||| |
|
|
| T |
20586 |
tcaataagttcttctctaggaattttagaatatacctcatttttatcttcagagtct |
20530 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0116
Description:
Target: scaffold0116; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 26307 - 26251
Alignment:
| Q |
12 |
tcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtct |
68 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||| |||||||||||| |||||||||| |
|
|
| T |
26307 |
tcaataagttcttctctgggaattttagaatatacctcattttcatcttcagagtct |
26251 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0359 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0359
Description:
Target: scaffold0359; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7914 - 7847
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcagagtct |
68 |
Q |
| |
|
||||||| || ||||||||||||||||| |||| |||||| || |||||||||||| |||||||||| |
|
|
| T |
7914 |
ctttaagagactcaataagttcttttctgggaaatttagaatacacctcattttcatcttcagagtct |
7847 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2116 - 2177
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattca |
62 |
Q |
| |
|
||||||| || ||||| ||||||| ||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
2116 |
ctttaagagactcaattagttcttctctaggaattttagaatatacctcattttcatcttca |
2177 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 6730 - 6838
Alignment:
| Q |
96 |
gtagctactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactct |
195 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||||| || | || ||||| |||||||| || || | ||||||||||||||||| ||||| | ||||| |
|
|
| T |
6730 |
gtagctactaaccccacagctacatttgcttcatcttctgcttcttccttttcagacccagattcactgtctaaatcttcccaggttgccattaaactct |
6829 |
T |
|
| Q |
196 |
gcttgatct |
204 |
Q |
| |
|
||| |||| |
|
|
| T |
6830 |
tcttaatct |
6838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 13694231 - 13694339
Alignment:
| Q |
96 |
gtagctactaaccccacaaccacatttacttcatcctcaacatcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactct |
195 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| ||| | ||||| || ||| || |||| || || |||| ||||| |||||| |||||||||||| |
|
|
| T |
13694231 |
gtagctactaatcccacaaccacattagcttcatcttcagcttcatctttctcaaactctgattcattatctagatctttccaggtacccatcagactct |
13694330 |
T |
|
| Q |
196 |
gcttgatct |
204 |
Q |
| |
|
||||||| |
|
|
| T |
13694331 |
ttttgatct |
13694339 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 14906541 - 14906498
Alignment:
| Q |
14 |
aataagttcttttctaggaattttagagtatgcctcattttcat |
57 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
14906541 |
aataagttcttctctaggaattttagaatatacctcattttcat |
14906498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14712983 - 14712927
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcat |
57 |
Q |
| |
|
||||||| || |||| |||||||||||| |||||||| || ||| |||||||||||| |
|
|
| T |
14712983 |
ctttaagagactcaacaagttcttttctgggaattttggaatatacctcattttcat |
14712927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 18064677 - 18064717
Alignment:
| Q |
17 |
aagttcttttctaggaattttagagtatgcctcattttcat |
57 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||||||||||| |
|
|
| T |
18064677 |
aagttcttgtctaggaattttggagtatacctcattttcat |
18064717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0193 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15344 - 15407
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcaga |
64 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||||||||| ||| ||||||||| || |||||| |
|
|
| T |
15344 |
ctttaagagactcaataagttcttctctgggaattttagaatatacctcatttttatcttcaga |
15407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 43945 - 43882
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcatattcaga |
64 |
Q |
| |
|
||||||| || ||||||||||||| ||| |||||||||| ||| |||||||||||| |||||| |
|
|
| T |
43945 |
ctttaagagactcaataagttcttctctgagaattttagaatatacctcattttcatcttcaga |
43882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0772 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0772
Description:
Target: scaffold0772; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 2084 - 2016
Alignment:
| Q |
136 |
catcatccttatcagaccctgactcgttctctaaatcttcccaggtggccatcagactctgcttgatct |
204 |
Q |
| |
|
|||||||||||||| ||||||| | | || |||||||| |||||||||||||||||||||| |||| |
|
|
| T |
2084 |
catcatccttatcaaaccctgattgagtatccaaatcttctgaggtggccatcagactctgcttaatct |
2016 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 45386 - 45330
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcat |
57 |
Q |
| |
|
||||||| || |||| |||||||| |||||||||||| || ||| |||||||||||| |
|
|
| T |
45386 |
ctttaagagactcaacaagttcttgtctaggaattttggaatatacctcattttcat |
45330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 55689 - 55633
Alignment:
| Q |
1 |
ctttaagtgattcaataagttcttttctaggaattttagagtatgcctcattttcat |
57 |
Q |
| |
|
||||||| || |||| |||||||| |||||||||||| || ||| |||||||||||| |
|
|
| T |
55689 |
ctttaagagactcaacaagttcttgtctaggaattttggaatatacctcattttcat |
55633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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