View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13769_low_1 (Length: 331)
Name: NF13769_low_1
Description: NF13769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13769_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 22 - 331
Target Start/End: Complemental strand, 30637370 - 30637064
Alignment:
| Q |
22 |
gcttcgccacaagaaaccaatggaaataagagaaagtcaatattacttcttttctctatgtaatcaatgtctatttttctttctttcttgatttgctcca |
121 |
Q |
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| T |
30637370 |
gcttcaccacaagaaaccaaagaaaataagagaaagtcaatattacttct---ctctctgtaatcaatgtctatttttctttctttcttgatttgctcca |
30637274 |
T |
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| Q |
122 |
cttcttagatgctaagtacattcaaagcctcatttattgaggagaagtagcttaaggtgaatgagaaaacgactaaatggtcatgcaataaatcgatata |
221 |
Q |
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| T |
30637273 |
cttcttagatgctaagtacattcaaagcctcatttattgaggagaagtagcttaaggtgaatgagaaaacgactaaatggtcatgcaataaatcgatata |
30637174 |
T |
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| Q |
222 |
tgtcctagttggctaccaaactgtgtcagctgcaacaaagtcgaaagtatgttttaagagatggtgaatttaataacatatgaggaaggaaatgtgccaa |
321 |
Q |
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| T |
30637173 |
tgtactagttggctaccaaactgtgtcagctgcaacaaagttgaaagtatgttttaagagatggtgaatttaataacatatgaggaaggaaatgtgccaa |
30637074 |
T |
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| Q |
322 |
aggtaggagc |
331 |
Q |
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| T |
30637073 |
aggtaggagc |
30637064 |
T |
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