View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13769_low_2 (Length: 328)
Name: NF13769_low_2
Description: NF13769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13769_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 6 - 313
Target Start/End: Original strand, 4292870 - 4293179
Alignment:
| Q |
6 |
acatacttttgttttgcctttccttgatagagataggctagtttcattgtttagctatggaattgaagtaagtggcagtagaatagatggcttgccatct |
105 |
Q |
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| T |
4292870 |
acatacttttgttttgcctttccttgatagagataggctagttttattgtttagctagggaattgaagtaagtggaagtagaaaagatggcttgccatct |
4292969 |
T |
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| Q |
106 |
atgcttctcacccttttcttttatcagagacattttggtctccatttttagactctcttatttgtaacagggtgcaggccca-tcctgccannnnnnnaa |
204 |
Q |
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| T |
4292970 |
atgcttctcacacttttctttaatcaaagacattttggtctccatttttagactctctcatttgtaatagggtgcaggcccactcctgccttttttttaa |
4293069 |
T |
|
| Q |
205 |
tgcattttttaccctttat-nnnnnnnnnnggttaaaacctaatgacccatgatgaaaaactcctatactttttcatgctaaatgccaccataactaata |
303 |
Q |
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| T |
4293070 |
tgcattttttagcctttataaaaaaaaaatggttaaaatctaatgacccatgatgaaaaactcttatactttttcatgctaaatgccaccataactaata |
4293169 |
T |
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| Q |
304 |
catgtgataa |
313 |
Q |
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||||||||| |
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| T |
4293170 |
tatgtgataa |
4293179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 8058708 - 8058894
Alignment:
| Q |
2 |
atccacatacttttgttttgcctttccttgatagagataggctagtttcatt---gtttagctatggaattgaagtaagtggcagtagaatagatggctt |
98 |
Q |
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| T |
8058708 |
atccacattattttgttttgcctttccttgtttgagatatgctagtctagtttctgttttgctagggatttgttgtatgtggcagtagtttacatggatt |
8058807 |
T |
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| Q |
99 |
gccatctatgcttctcacccttttcttttatcagagacattttggtctccatttttagactctcttatttgtaacagggtgcaggccc |
186 |
Q |
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| T |
8058808 |
gccatctttacttcgc-cccttttcttttatcagacactttttagtcttctgttttagactctctcatatgtaatagggtgcaggccc |
8058894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 28138352 - 28138294
Alignment:
| Q |
104 |
ctatgcttctcacccttttcttttatcagagacattttggtctccatttttagactctct |
163 |
Q |
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| T |
28138352 |
ctatgcttctcgcccttt-cttttatcagagacattttggtctccatttttagattctct |
28138294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 30587465 - 30587555
Alignment:
| Q |
97 |
ttgccatctatgcttctcacccttttcttttatcagagacattttggtctccatttttagactctcttatttgtaacagggtgcaggccca |
187 |
Q |
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| T |
30587465 |
ttgccatctttgcttcttccccttttctttttttagtaacattttggtctacttttttagattctctcatttgtaatagggtgcaggccca |
30587555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 12107070 - 12107141
Alignment:
| Q |
117 |
ccttttcttttatcagagacattttggtctccatttttagactctcttatttgta--acagggtgcaggccc |
186 |
Q |
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|||||||||||||||||||| |||| |||| | |||||||||||||| || |||| | ||||||||||||| |
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| T |
12107070 |
ccttttcttttatcagagactttttagtcttcttttttagactctctcatatgtaatatagggtgcaggccc |
12107141 |
T |
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