View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1376_high_100 (Length: 291)
Name: NF1376_high_100
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_100 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 43 - 291
Target Start/End: Complemental strand, 3261821 - 3261572
Alignment:
| Q |
43 |
aacattatcttgtgtttgttctatcttaattctttttggttgtaattggnnnnnnnnn-aatatttttgaaaactttttccttcttgataaacaaaaagg |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3261821 |
aacattatcttgtgtttgttctatcttaattctttttggttgtaattggtattttttttaatatttttgcaaactttttccttcttgataaacaaaaagg |
3261722 |
T |
|
| Q |
142 |
attgtgccatttgagtgataaatcatcattgactttaactctctagaacttgccctaaccattttgaagctaatttttactcttgaagcatgttgtgatg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3261721 |
attgtgccatttgagtgataaatcatcattgactttgactctctagaacttgccctaaccattttgaagctaatttttactcttgaagcatgttgtgatg |
3261622 |
T |
|
| Q |
242 |
aaaaatgagcactataggactctttctttgttggcataggattctttctt |
291 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3261621 |
aaaaatgagcactataggattctttctttgttggcataggattctttctt |
3261572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 39142555 - 39142519
Alignment:
| Q |
10 |
aagaatatagatgtttaaccacctaatcactaaaaca |
46 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39142555 |
aagaaaatagatgtttaaccacctaatcactaaaaca |
39142519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University