View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_109 (Length: 276)
Name: NF1376_high_109
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_109 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 127 - 249
Target Start/End: Original strand, 36675229 - 36675351
Alignment:
| Q |
127 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaacgta |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36675229 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaaccta |
36675328 |
T |
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| Q |
227 |
aaaattaacaatactaacatttg |
249 |
Q |
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|||| |||||||||||||||||| |
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| T |
36675329 |
aaaaataacaatactaacatttg |
36675351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 127 - 249
Target Start/End: Original strand, 36685311 - 36685433
Alignment:
| Q |
127 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaacgta |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36685311 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaaccta |
36685410 |
T |
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| Q |
227 |
aaaattaacaatactaacatttg |
249 |
Q |
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|||| |||||||||||||||||| |
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| T |
36685411 |
aaaaataacaatactaacatttg |
36685433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 36675117 - 36675179
Alignment:
| Q |
11 |
cataggtgggtcatactaatttgctttttaagctttcattaaaaacatatatatgtacttcaggaat |
77 |
Q |
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| T |
36675117 |
cataggtgggtcatactaatttgctttttaagctttcattaaaaacatat----gtacttcaggaat |
36675179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 249
Target Start/End: Original strand, 25991706 - 25991736
Alignment:
| Q |
219 |
ttaacgtaaaaattaacaatactaacatttg |
249 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
25991706 |
ttaacgtaaaaattaacaatactaacatttg |
25991736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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