View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1376_high_11 (Length: 616)
Name: NF1376_high_11
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 365 - 601
Target Start/End: Original strand, 50806140 - 50806376
Alignment:
| Q |
365 |
ctatgaagctattttatttataacagatatggctatttgattttttacggcttatgtttcattttccattgtgttgttatagaatattgtcttcgatgct |
464 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50806140 |
ctatgaagctattttatttataacagatatggctatttgattttttacggcttatgtttcattttccattgtgttgttatagaatattgtcttcgatgct |
50806239 |
T |
|
| Q |
465 |
ccaactcagtcactgaaccttgagaaggttgatacatttgctgaatcctcgaaatcagttccgattcctacggtatgtcaaaacttgtaatatataggga |
564 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50806240 |
ccaactcagtcactgaaccttgagaaggttgatacatttgctgaatcctcgaaatcagttccgattcctacggtatgtcaaaacttgtaatatataggga |
50806339 |
T |
|
| Q |
565 |
tttcaaaacttcaaatatattactggactcgctatgt |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
50806340 |
tttcaaaacttcaaatatattactggactcgctatgt |
50806376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 365 - 601
Target Start/End: Complemental strand, 50869737 - 50869501
Alignment:
| Q |
365 |
ctatgaagctattttatttataacagatatggctatttgattttttacggcttatgtttcattttccattgtgttgttatagaatattgtcttcgatgct |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50869737 |
ctatgaagctattttatttataacagatatggctatttgattttttacggcttatgttttgttttccattgtgttgttatagaatattgtcttcgatgct |
50869638 |
T |
|
| Q |
465 |
ccaactcagtcactgaaccttgagaaggttgatacatttgctgaatcctcgaaatcagttccgattcctacggtatgtcaaaacttgtaatatataggga |
564 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50869637 |
ccaactcagtcactgaaccttgagaaggttgatacatttgctgaatcctcgaaatcagttccgattcctacggtatgtcaaaacttgtaatatataggga |
50869538 |
T |
|
| Q |
565 |
tttcaaaacttcaaatatattactggactcgctatgt |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
50869537 |
tttcaaaacttcaaatatattactggactcgctatgt |
50869501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 76 - 264
Target Start/End: Original strand, 50805851 - 50806039
Alignment:
| Q |
76 |
cgagtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttcagttattc |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50805851 |
cgagtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttcagttattc |
50805950 |
T |
|
| Q |
176 |
actgttgtagaaattccctttttgtggtgtttttggagaagaaaataatgcataatgaggatcattggtggcagatagatagatggaac |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50805951 |
actgttgtagaaattccctttttgtggtgtttttggagaagaaaataatgcataatgaggatcattggtggcagatagatagatggaac |
50806039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 76 - 264
Target Start/End: Complemental strand, 50870026 - 50869838
Alignment:
| Q |
76 |
cgagtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttcagttattc |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870026 |
cgagtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttcagttattc |
50869927 |
T |
|
| Q |
176 |
actgttgtagaaattccctttttgtggtgtttttggagaagaaaataatgcataatgaggatcattggtggcagatagatagatggaac |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50869926 |
actgttgtagaaattccctttttgtggtgtttttggagaagaaaataatgcataatgaggatcattggtggcagatagatagatggaac |
50869838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 365 - 547
Target Start/End: Complemental strand, 44197216 - 44197037
Alignment:
| Q |
365 |
ctatgaagctattttatttataacagatatggctatttgattttttacggcttatgtttcattttccattgtgttgttatagaatattgtcttcgatgct |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
44197216 |
ctatgaagctattttatttataacagatatggctatttgattttttacagcttatgtttcgttttccattgtgtt---atagaatattgtcttcgatgct |
44197120 |
T |
|
| Q |
465 |
ccaactcagtcactgaaccttgagaaggttgatacatttgctgaatcctcgaaatcagttccgattcctacggtatgtcaaaa |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44197119 |
ccaactcagtcactgaaccttgagaaggttgatacatttgctgaatcctcgaaatcagttccgattcctacggtatgtcaaaa |
44197037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 545 - 601
Target Start/End: Complemental strand, 44196541 - 44196485
Alignment:
| Q |
545 |
aaacttgtaatatatagggatttcaaaacttcaaatatattactggactcgctatgt |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44196541 |
aaacttgtaatatatagggatttcaaaacttcaaatatattactggactcggtatgt |
44196485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 545 - 601
Target Start/End: Original strand, 48553641 - 48553697
Alignment:
| Q |
545 |
aaacttgtaatatatagggatttcaaaacttcaaatatattactggactcgctatgt |
601 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48553641 |
aaacctgtaatttatagggatttcaaaacttcaaatatattactggactcggtatgt |
48553697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 78 - 264
Target Start/End: Complemental strand, 13675617 - 13675431
Alignment:
| Q |
78 |
agtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttcagttattcac |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13675617 |
agtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttaagttattcac |
13675518 |
T |
|
| Q |
178 |
tgttgtagaaattccctttttgtggtgtttttggagaagaaaataatgcataatgaggatcattggtggcagatagatagatggaac |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13675517 |
tgttgtagaaattccctttttgtggtgtttttggagaagaaaataatgcataatgaggatcattggtggcagatagatagatggaac |
13675431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 365 - 547
Target Start/End: Complemental strand, 13675330 - 13675148
Alignment:
| Q |
365 |
ctatgaagctattttatttataacagatatggctatttgattttttacggcttatgtttcattttccattgtgttgttatagaatattgtcttcgatgct |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13675330 |
ctatgaagctattttatttataacagatatggctatttgattttttacggcttatgtttcgttttccattgtgttgttatagaatattgtcttcgatgct |
13675231 |
T |
|
| Q |
465 |
ccaactcagtcactgaaccttgagaaggttgatacatttgctgaatcctcgaaatcagttccgattcctacggtatgtcaaaa |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13675230 |
ccaactcagtcactgaaccttgagaaggttgatacatttgctgaatcctcgaaatcagttccgattcctacggtatgtcaaaa |
13675148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 2e-97; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 76 - 264
Target Start/End: Original strand, 19965100 - 19965288
Alignment:
| Q |
76 |
cgagtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttcagttattc |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19965100 |
cgagtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttcagttattc |
19965199 |
T |
|
| Q |
176 |
actgttgtagaaattccctttttgtggtgtttttggagaagaaaataatgcataatgaggatcattggtggcagatagatagatggaac |
264 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19965200 |
actgttgtagaaattccctttttgtggtgattttggagaagcaaataatgcataatgaggatcattggtggcagatagatagatggaac |
19965288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 365 - 504
Target Start/End: Original strand, 19965389 - 19965528
Alignment:
| Q |
365 |
ctatgaagctattttatttataacagatatggctatttgattttttacggcttatgtttcattttccattgtgttgttatagaatattgtcttcgatgct |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19965389 |
ctatgaagctattttatttataacagatatggctatttgattttttacggcttatgtttcgttttccattgtgttgttatagaatattgtcttcgatgct |
19965488 |
T |
|
| Q |
465 |
ccaactcagtcactgaaccttgagaaggttgatacatttg |
504 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19965489 |
ccaacccagtcactgaaccttgagaaggttgatacatttg |
19965528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 545 - 601
Target Start/End: Original strand, 19965832 - 19965888
Alignment:
| Q |
545 |
aaacttgtaatatatagggatttcaaaacttcaaatatattactggactcgctatgt |
601 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
19965832 |
aaacttgtaatatatagggatttcaaaaattcaaatatattactggactcggtatgt |
19965888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 586
Target Start/End: Complemental strand, 25137402 - 25137366
Alignment:
| Q |
550 |
tgtaatatatagggatttcaaaacttcaaatatatta |
586 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25137402 |
tgtaatatatagggatttcaaaacttccaatatatta |
25137366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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