View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_111 (Length: 271)
Name: NF1376_high_111
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_111 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 36675351 - 36675229
Alignment:
| Q |
18 |
caaatgttagtattgttaatttttacgttaaaattgaaaaatgcgggaagagatttagaaataatcttacactggagacaagaacatgcagccggcgatg |
117 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675351 |
caaatgttagtattgttattttttaggttaaaattgaaaaatgcgggaagagatttagaaataatcttacactggagacaagaacatgcagccggcgatg |
36675252 |
T |
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| Q |
118 |
acatttcctgaagtcaagaagga |
140 |
Q |
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| T |
36675251 |
acatttcctgaagtcaagaagga |
36675229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 36685433 - 36685311
Alignment:
| Q |
18 |
caaatgttagtattgttaatttttacgttaaaattgaaaaatgcgggaagagatttagaaataatcttacactggagacaagaacatgcagccggcgatg |
117 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685433 |
caaatgttagtattgttattttttaggttaaaattgaaaaatgcgggaagagatttagaaataatcttacactggagacaagaacatgcagccggcgatg |
36685334 |
T |
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| Q |
118 |
acatttcctgaagtcaagaagga |
140 |
Q |
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||||||||||||||||||||||| |
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| T |
36685333 |
acatttcctgaagtcaagaagga |
36685311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 36675179 - 36675113
Alignment:
| Q |
190 |
attcctgaagtacatatatatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatgatac |
260 |
Q |
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| T |
36675179 |
attcctgaagtac----atatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatgatac |
36675113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 25991736 - 25991706
Alignment:
| Q |
18 |
caaatgttagtattgttaatttttacgttaa |
48 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
25991736 |
caaatgttagtattgttaatttttacgttaa |
25991706 |
T |
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