View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_112 (Length: 268)
Name: NF1376_high_112
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_112 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 34848302 - 34848541
Alignment:
| Q |
1 |
tataattttaaattattgatttagaatgttaaatgaaattaacatctaacaagnnnnnnn-gatattttgttattttattcattaggagttccatggaca |
99 |
Q |
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| T |
34848302 |
tataattttaaattattgatttagaatgttaaatgaaattaacatctaacaagttttttttgatattttgttattttattcattaggagttccatggaca |
34848401 |
T |
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| Q |
100 |
gaagaagagcatagaaaattccttgttggacttgagaagcttggaaaaggagattggaggggtatctctagaaactatgtgactacaagaacaccaacac |
199 |
Q |
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| T |
34848402 |
gaagaagagcatagaaaattccttgttggacttgagaagcttggaaaaggagattggaggggtatctctagaaactatgtgactacaagaacaccaacac |
34848501 |
T |
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| Q |
200 |
aagttgcaagccatgctcaaaagtattttattcgacttgc |
239 |
Q |
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| T |
34848502 |
aagttgcaagccatgctcaaaagtattttattcgacttgc |
34848541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 42729582 - 42729445
Alignment:
| Q |
84 |
aggagttccatggacagaagaagagcatagaaaattccttgttggacttgagaagcttggaaaaggagattggaggggtatctctagaaactatgtgact |
183 |
Q |
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| T |
42729582 |
aggagttccatggacagaagaagagcacagaatgttccttgttggattagagaagctaggaaaaggagactggagaggaatctctaaaaactttgtcact |
42729483 |
T |
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| Q |
184 |
acaagaacaccaacacaagttgcaagccatgctcaaaa |
221 |
Q |
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| T |
42729482 |
tcaagaactcctacacaagttgctagccatgctcaaaa |
42729445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 44300607 - 44300691
Alignment:
| Q |
140 |
ttggaaaaggagattggaggggtatctctagaaactatgtgactacaagaacaccaacacaagttgcaagccatgctcaaaagta |
224 |
Q |
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| T |
44300607 |
ttggaaaaggtgattggagaggaatctcaaggaactatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagta |
44300691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 4386753 - 4386803
Alignment:
| Q |
177 |
tgtgactacaagaacaccaacacaagttgcaagccatgctcaaaagtattt |
227 |
Q |
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| T |
4386753 |
tgtgacaacaaggatacaaacacaagttgcaagtcatgctcaaaagtattt |
4386803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 29564910 - 29564950
Alignment:
| Q |
187 |
agaacaccaacacaagttgcaagccatgctcaaaagtattt |
227 |
Q |
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| T |
29564910 |
agaacaccaactcaagtagcaagccatgctcaaaagtattt |
29564950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 12134774 - 12134822
Alignment:
| Q |
188 |
gaacaccaacacaagttgcaagccatgctcaaaagtattttattcgact |
236 |
Q |
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| T |
12134774 |
gaacaccaacacaagtagcaagccatgcgcaaaaatacttcattcgact |
12134822 |
T |
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