View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1376_high_114 (Length: 265)
Name: NF1376_high_114
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_114 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 22278348 - 22278588
Alignment:
| Q |
3 |
agaaagtttacctatattcctcacccccaccccaaaaaagacaacataaaatagaattgatagcggaaatgatacctgaagaggctttgaagaagtaaat |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
22278348 |
agaaaatttacctatattcctcacccccaccccaaaaaagacaacataaaatagaatcgatagaggaaatgatacctgaagaggctttgaagaagtagat |
22278447 |
T |
|
| Q |
103 |
agcataaacatgaagagatgatggtacatacttcaacgcacaatttcatctttaatttctagccaaaagtctttgaaaaaactaaaatttataccatcca |
202 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22278448 |
agcataaacatgaaaagatgatggtacatacttcaacgcacaatttcatcttttatttctagccaaaagtctttgaaaaaactaaaatttataccatccg |
22278547 |
T |
|
| Q |
203 |
gaccagaactcttaaaacagtcccagatctccactttaact |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22278548 |
gaccagaactcttaaaacagtcccagatctccactttaact |
22278588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 21089945 - 21089887
Alignment:
| Q |
62 |
atagcggaaatgatacctgaagaggctttgaagaagtaaatagcataaacatgaagaga |
120 |
Q |
| |
|
|||| ||||||||||||||||| | |||||||||| |||||||||||| | ||||||| |
|
|
| T |
21089945 |
atagaggaaatgatacctgaagggaatttgaagaaggaaatagcataaataggaagaga |
21089887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 17829460 - 17829525
Alignment:
| Q |
49 |
taaaatagaattgatagcggaaatgatacctgaagaggctttgaagaagtaaatagcataaacatg |
114 |
Q |
| |
|
||||| ||||| ||||| ||| ||||||||||| | |||||||||||| ||||||||||| |||| |
|
|
| T |
17829460 |
taaaaaagaatcgatagaggagatgatacctgagggagctttgaagaagaaaatagcataatcatg |
17829525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 380706 - 380758
Alignment:
| Q |
68 |
gaaatgatacctgaagaggctttgaagaagtaaatagcataaacatgaagaga |
120 |
Q |
| |
|
|||||||||||||| || |||||||||||| ||| |||||| ||||| ||||| |
|
|
| T |
380706 |
gaaatgatacctgatgaagctttgaagaaggaaagagcatagacatgcagaga |
380758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 41352634 - 41352565
Alignment:
| Q |
28 |
cccaccccaaaaaagacaacataaaatagaattgatagcggaaatgatacctgaagaggctttgaagaag |
97 |
Q |
| |
|
||||||| |||| | || |||||||||||||| |||| |||||||||| |||| | ||||||||||||| |
|
|
| T |
41352634 |
cccaccctaaaagaaacgacataaaatagaatcaatagaggaaatgatatctgacggggctttgaagaag |
41352565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University