View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_12 (Length: 585)
Name: NF1376_high_12
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 30 - 575
Target Start/End: Complemental strand, 41152522 - 41151976
Alignment:
| Q |
30 |
gcggcgacatttgatatgctgagaggcgaattgaaatccgcaattctctacttctcaacacttagtgtttgcgataaacttattatacaatccaagcaag |
129 |
Q |
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| T |
41152522 |
gcggcgacatttgatatgctgagaggcgaattgaaatccgcaattctctacttctcaacacttagtgtttgcgataaacttattatacaatccaagcaag |
41152423 |
T |
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| Q |
130 |
atacgcgaacaaaaattcaagtaaaactttagnnnnnnnnnnnnnnnnn-ttccatatgcggttattgactaatttgagaaatccaatcatacgtatact |
228 |
Q |
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| T |
41152422 |
atacgcgaacaaaaattcaagtaaaactttagtttttttttttttttaaattccatatccaattactgactaatttgagaaatccaatcatacgtatact |
41152323 |
T |
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| Q |
229 |
ttatttgatttgaagcacacaaacaatgtaagtgaaagtgattaaaagatctgacctgggcaccaatgccatactcacgagcatcaacagctaaccctaa |
328 |
Q |
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| T |
41152322 |
ttatttgatttgaagcacacaaacaatgtaagtgaaagtgattaaaagatctgacctgggcaccaatgccatactcacgagcatcaacagctaaccctaa |
41152223 |
T |
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| Q |
329 |
atctatgtttgcttggactgtatcacgaccttgatcttgcaagttataggcttgaagtttgtgacccaacccaatgcctcttccttcatgacctctaaga |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41152222 |
atctatgtttgcttggactgtatcacgaccttgatcttgcaagttataggcttgaagtttgtgacccaacccaatgcctcttccttcatgacctctaaga |
41152123 |
T |
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| Q |
429 |
taaacaattactcctcttccagcttcttcaatcaattccatagccaaatctagttgctggccacagtcacaccgagctgatccaaatatatccccagtta |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41152122 |
taaacaattactcctcttccagcttcttcaatcaattccatagccaaatctagttgctggccacagtcacaccgagctgatccaaatatatccccagtta |
41152023 |
T |
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| Q |
529 |
aacattctgaatgcactcttactagaacatcttgcccatctcctatg |
575 |
Q |
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| T |
41152022 |
aacattctgaatgcactcttactagaacatcttgcccatctcctatg |
41151976 |
T |
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