View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_high_121 (Length: 253)

Name: NF1376_high_121
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_high_121
NF1376_high_121
[»] chr7 (17 HSPs)
chr7 (1-117)||(46818630-46818746)
chr7 (136-237)||(46818500-46818601)
chr7 (160-235)||(31235878-31235953)
chr7 (160-235)||(6001937-6002012)
chr7 (160-232)||(36143782-36143853)
chr7 (162-235)||(35667318-35667390)
chr7 (160-234)||(20116499-20116572)
chr7 (160-234)||(23425459-23425532)
chr7 (160-235)||(1485343-1485417)
chr7 (178-232)||(43369855-43369908)
chr7 (160-217)||(2843332-2843388)
chr7 (160-229)||(3860868-3860935)
chr7 (166-235)||(32522013-32522081)
chr7 (163-216)||(32684604-32684656)
chr7 (160-217)||(35496280-35496336)
chr7 (175-235)||(42067147-42067206)
chr7 (175-235)||(48207833-48207892)
[»] chr4 (23 HSPs)
chr4 (160-246)||(35965050-35965136)
chr4 (163-233)||(18139001-18139071)
chr4 (163-233)||(49126214-49126284)
chr4 (160-235)||(21090081-21090155)
chr4 (160-235)||(51317914-51317988)
chr4 (160-217)||(38706815-38706871)
chr4 (175-235)||(12265398-12265458)
chr4 (160-235)||(34024523-34024597)
chr4 (177-228)||(35261137-35261187)
chr4 (160-217)||(2115693-2115749)
chr4 (175-234)||(2624441-2624500)
chr4 (160-227)||(1008223-1008289)
chr4 (160-235)||(8009447-8009520)
chr4 (160-235)||(10359633-10359707)
chr4 (160-235)||(10389840-10389914)
chr4 (160-235)||(31381758-31381832)
chr4 (163-217)||(25273811-25273864)
chr4 (163-217)||(43154126-43154179)
chr4 (160-217)||(9528983-9529039)
chr4 (160-217)||(56194527-56194583)
chr4 (160-196)||(14183731-14183767)
chr4 (162-217)||(23100617-23100673)
chr4 (164-235)||(46991216-46991287)
[»] chr3 (21 HSPs)
chr3 (160-246)||(46178490-46178576)
chr3 (161-233)||(37169145-37169217)
chr3 (160-229)||(38440670-38440738)
chr3 (160-215)||(22802935-22802990)
chr3 (175-234)||(47980750-47980809)
chr3 (175-234)||(47990037-47990096)
chr3 (175-234)||(47999324-47999383)
chr3 (175-234)||(48008611-48008670)
chr3 (160-217)||(4172480-4172536)
chr3 (164-217)||(17237720-17237772)
chr3 (160-217)||(25631632-25631688)
chr3 (162-235)||(39917483-39917555)
chr3 (160-235)||(46934556-46934630)
chr3 (160-217)||(25162350-25162405)
chr3 (160-217)||(3850560-3850616)
chr3 (162-235)||(29503378-29503450)
chr3 (160-217)||(35499306-35499362)
chr3 (160-217)||(36906035-36906091)
chr3 (160-196)||(2342405-2342441)
chr3 (160-196)||(4178478-4178514)
chr3 (175-203)||(16235323-16235351)
[»] chr8 (14 HSPs)
chr8 (175-237)||(15597251-15597312)
chr8 (175-233)||(33342375-33342433)
chr8 (160-237)||(16794216-16794292)
chr8 (160-235)||(35580381-35580455)
chr8 (160-234)||(28239756-28239830)
chr8 (159-235)||(11725604-11725679)
chr8 (163-235)||(43192432-43192503)
chr8 (175-235)||(11196828-11196887)
chr8 (175-217)||(9498707-9498748)
chr8 (175-246)||(39153217-39153291)
chr8 (160-217)||(9619463-9619519)
chr8 (175-236)||(33298794-33298854)
chr8 (161-217)||(17949171-17949226)
chr8 (175-235)||(19876150-19876209)
[»] chr6 (16 HSPs)
chr6 (160-246)||(34489164-34489252)
chr6 (160-235)||(33543706-33543780)
chr6 (160-217)||(33740683-33740739)
chr6 (163-235)||(23947404-23947475)
chr6 (160-235)||(33109750-33109824)
chr6 (160-217)||(8196512-8196568)
chr6 (175-220)||(12165772-12165816)
chr6 (160-235)||(8028204-8028279)
chr6 (160-235)||(16419074-16419149)
chr6 (160-234)||(4468475-4468548)
chr6 (160-206)||(12652856-12652901)
chr6 (160-197)||(8266551-8266588)
chr6 (160-217)||(8496881-8496937)
chr6 (160-229)||(17237377-17237445)
chr6 (160-217)||(25064151-25064207)
chr6 (175-246)||(25337501-25337572)
[»] chr1 (20 HSPs)
chr1 (160-234)||(18569397-18569471)
chr1 (161-235)||(34519054-34519127)
chr1 (160-246)||(39987310-39987395)
chr1 (160-235)||(14545440-14545514)
chr1 (160-235)||(38520620-38520694)
chr1 (160-217)||(19716002-19716058)
chr1 (160-217)||(28035059-28035115)
chr1 (160-235)||(25406370-25406445)
chr1 (7-75)||(36882892-36882960)
chr1 (160-227)||(27872659-27872725)
chr1 (160-235)||(51871784-51871858)
chr1 (160-206)||(9919309-9919354)
chr1 (160-235)||(11453854-11453930)
chr1 (160-217)||(25728064-25728120)
chr1 (160-217)||(35584726-35584782)
chr1 (160-217)||(50166204-50166260)
chr1 (160-217)||(51868750-51868806)
chr1 (175-235)||(3871344-3871403)
chr1 (160-196)||(5324682-5324718)
chr1 (160-196)||(30818470-30818506)
[»] chr5 (21 HSPs)
chr5 (160-246)||(15570828-15570914)
chr5 (160-206)||(19259928-19259974)
chr5 (175-235)||(30298142-30298201)
chr5 (160-235)||(21060368-21060442)
chr5 (160-217)||(20257799-20257855)
chr5 (160-235)||(2057924-2057999)
chr5 (163-235)||(7613144-7613214)
chr5 (160-235)||(11767726-11767802)
chr5 (162-217)||(27266965-27267019)
chr5 (162-217)||(42579801-42579855)
chr5 (160-217)||(7241701-7241757)
chr5 (160-217)||(7246877-7246933)
chr5 (160-217)||(10649372-10649428)
chr5 (162-235)||(16981211-16981283)
chr5 (160-217)||(18677571-18677627)
chr5 (160-217)||(26578168-26578224)
chr5 (175-231)||(28097086-28097142)
chr5 (160-217)||(30371643-30371699)
chr5 (163-220)||(34881631-34881687)
chr5 (175-235)||(27751860-27751919)
chr5 (163-235)||(42886401-42886471)
[»] scaffold0311 (1 HSPs)
scaffold0311 (160-235)||(8636-8710)
[»] chr2 (22 HSPs)
chr2 (160-235)||(4192759-4192833)
chr2 (162-235)||(17319246-17319317)
chr2 (160-234)||(26025497-26025570)
chr2 (160-229)||(3725101-3725169)
chr2 (160-217)||(6173552-6173608)
chr2 (160-217)||(20047187-20047243)
chr2 (160-229)||(31581812-31581880)
chr2 (163-235)||(22421659-22421730)
chr2 (159-235)||(40626114-40626189)
chr2 (160-235)||(7015797-7015871)
chr2 (162-244)||(8308097-8308176)
chr2 (160-235)||(34598908-34598982)
chr2 (163-217)||(41712870-41712923)
chr2 (178-235)||(8971713-8971769)
chr2 (160-217)||(27249256-27249312)
chr2 (160-217)||(30420597-30420653)
chr2 (160-217)||(32680687-32680743)
chr2 (175-235)||(3270315-3270374)
chr2 (162-206)||(18694970-18695013)
chr2 (175-235)||(32913177-32913236)
chr2 (180-232)||(36323799-36323850)
chr2 (175-235)||(40660018-40660077)
[»] scaffold0146 (1 HSPs)
scaffold0146 (164-217)||(16427-16479)
[»] scaffold0014 (1 HSPs)
scaffold0014 (160-235)||(201458-201532)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 46818746 - 46818630
Alignment:
Q  1 caagaatagaaaaatagcaagaaatgctattttctctgatggacattggagaattgaggttaaggatcctagaaggttgaactacatagattagattata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46818746 caagaatagaaaaatagcaagaaatgctattttctctgatggacattggagaattgaggttaaggatcctagaaggttgaactacatagattagattata 46818647  T
Q  101 atattatggtgtacaag 117  Q
    |||  ||||||||||||    
T  46818646 ataacatggtgtacaag 46818630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 46818601 - 46818500
Alignment:
Q  136 gttgaaagaaacatggtgtacaagtctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46818601 gttgaaagaaacatggtgtacaagtctttttctctctcgctcaatctaaataagtgatttttcacataaattttggttttttcttcatgatttcgtcatc 46818502  T
Q  236 cg 237  Q
    ||    
T  46818501 cg 46818500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 31235953 - 31235878
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| | |||||| ||| | |||||||||||||    
T  31235953 tctttttctctctatttcaatctaaataagtgatttttcacatagatctaggttttctctacgtgatttcgtcatc 31235878  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 6001937 - 6002012
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||| ||  || ||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||||    
T  6001937 tctttttctccctattttaatctaaataagtgatttttcacatagatttaggttttctctacgtgatttcgtcatc 6002012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 36143782 - 36143853
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtc 232  Q
    |||||||||||||  ||||||||||||||||| |||||||| ||||| | |||||||||||| ||||||||||    
T  36143782 tctttttctctctaattcaatctaaataagtg-tttttcacgtagatctaggttttttcttcgtgatttcgtc 36143853  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 35667390 - 35667318
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  35667390 tttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttcatcatc 35667318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 20116499 - 20116572
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    ||||||||| |||  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| ||||    
T  20116499 tctttttctatctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttgtgatttcatcat 20116572  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 23425532 - 23425459
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    ||||||||||| |  ||||||||||||||||||||||| |||||||| | |||||||||||  ||||||| ||||    
T  23425532 tctttttctctatatttcaatctaaataagtgattttt-acatagatctaggttttttctttgtgatttcatcat 23425459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 1485417 - 1485343
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | | |||||||||  ||||||| |||||    
T  1485417 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctagattttttctttgtgatttcatcatc 1485343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 43369908 - 43369855
Alignment:
Q  178 aatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtc 232  Q
    ||||||||||||||||||| ||||||||| |  ||||||||||| ||||||||||    
T  43369908 aatctaaataagtgatttt-cacatagatataagttttttcttcgtgatttcgtc 43369855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 2843388 - 2843332
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  2843388 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 2843332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 3860868 - 3860935
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 229  Q
    ||||||||||| |  |||||| ||||||||||| ||||||||||||| |||| ||||||||| |||||||    
T  3860868 tctttttctctttgtttcaatataaataagtga-ttttcacatagatcttgg-tttttcttcgtgatttc 3860935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 32522081 - 32522013
Alignment:
Q  166 tctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||  |||||| ||||||||||||||| |||||||||||  ||||||||||| | |||||| ||||    
T  32522081 tctctctatttcaatttaaataagtgatttt-cacatagatttatgttttttcttcgttatttcgccatc 32522013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 32684604 - 32684656
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttt 216  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | |||||||    
T  32684604 ttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttt 32684656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 35496336 - 35496280
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||| ||||||| ||||||||||||| | ||||||||    
T  35496336 tctttttctctctatttcaatctaattaagtga-ttttcacatagatctaggtttttt 35496280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 42067206 - 42067147
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||| ||||||||||||| | | |||||||||  ||||||| |||||    
T  42067206 ttcaatctaaataagtga-ttttcacatagatatagattttttctttctgatttcatcatc 42067147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 48207833 - 48207892
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||| ||||||||||||| |  ||||||||||  ||||||| |||||    
T  48207833 ttcaatctaaataagtga-ttttcacatagatctatgttttttctttgtgatttcatcatc 48207892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 35965136 - 35965050
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccgtctgtggtg 246  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||| | |||||||| ||| |||||||||||||||  |||||||    
T  35965136 tctttttctctctatttcaatctgaataagtgatttttcacatagatctaggtttttttttcgtgatttcgtcatccgagtgtggtg 35965050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 18139071 - 18139001
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtca 233  Q
    ||||||||||  ||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||||    
T  18139071 ttttctctctatttcaatctaaataagtgatttttcacatacatctaggttttttcttaatgatttcgtca 18139001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 49126284 - 49126214
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtca 233  Q
    ||||||||||  ||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||||    
T  49126284 ttttctctctatttcaatctaaataagtgatttttcacatacatctaggttttttcttaatgatttcgtca 49126214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 21090081 - 21090155
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||    
T  21090081 tctttttctctctatttcaatataaataagtgatttt-cacatagatttaggttttttcttcgtgatttcatcatc 21090155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 51317914 - 51317988
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  51317914 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttcatcatc 51317988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 38706871 - 38706815
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  38706871 tctttttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 38706815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 12265398 - 12265458
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||||||||||||||||| | |||||| ||| | |||||| ||||||    
T  12265398 ttcaatctaaataagtgatttttcacatagatctaggttttctctacgtgattttgtcatc 12265458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 34024597 - 34024523
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||||||||||||| | ||||||||||||| | |||||||||||  ||||||| |||||    
T  34024597 tctttttctctctatttcaatctaaataagtta-ttttcacatagatctaggttttttctttttgatttcatcatc 34024523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 35261137 - 35261187
Alignment:
Q  177 caatctaaataagtgatttttcacatagattttggttttttcttcatgattt 228  Q
    |||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  35261137 caatctaaataagtgatttt-cacatagatttaggttttttcttcgtgattt 35261187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 2115749 - 2115693
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||||| ||||||||    
T  2115749 tctttttctctttatttcaatctaaataagtga-ttttcacatagatttaggtttttt 2115693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 2624441 - 2624500
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttgg-ttttttcttcatgatttcgtcat 234  Q
    |||||||||||||||||| ||||||||||||| | || |||||||||| ||||||||||||    
T  2624441 ttcaatctaaataagtga-ttttcacatagatctaggtttttttcttcgtgatttcgtcat 2624500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 1008223 - 1008289
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatt 227  Q
    |||||||||||||  || ||||||||||||||| |||||||||| |||| | |||||||||| |||||    
T  1008223 tctttttctctctattttaatctaaataagtga-ttttcacataaatttagtttttttcttcgtgatt 1008289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 8009520 - 8009447
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||||||||||||||| |||||||||||| | | ||||||||||  ||||||| |||||    
T  8009520 tctttttctctctatttcaatctaaataagtga-ttttcacataga-tctagttttttctttgtgatttcatcatc 8009447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 10359707 - 10359633
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  ||| |||||||||||||| |||| ||||| || | |||||||||||| ||||||| |||||    
T  10359707 tctttttctctctatttcgatctaaataagtga-ttttaacatatatctaggttttttcttcgtgatttcatcatc 10359633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 10389914 - 10389840
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||| |  ||||||| |||||    
T  10389914 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggttttttccttttgatttcatcatc 10389840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 31381832 - 31381758
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||| ||||||||||| ||||||||||||| |  ||||||||||  ||||||| |||||    
T  31381832 tctttttctctctttttcaatttaaataagtga-ttttcacatagatctaagttttttctttgtgatttcatcatc 31381758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 25273811 - 25273864
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  25273811 ttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 25273864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 43154179 - 43154126
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  43154179 ttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 43154126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 9529039 - 9528983
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| |||||||||||||||  |||||||    
T  9529039 tctttttctctttatttcaatctaaataagtga-ttttcacatagatttatgtttttt 9528983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 56194527 - 56194583
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  56194527 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 56194583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 14183731 - 14183767
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttt 196  Q
    |||||||||||||  ||||||||||||||||||||||    
T  14183731 tctttttctctctatttcaatctaaataagtgatttt 14183767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 23100617 - 23100673
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtga-tttttcacatagattttggtttttt 217  Q
    |||||||||||  |||||||||||||||||| ||||| ||||||||||  |||||||    
T  23100617 tttttctctctaattcaatctaaataagtgatttttttacatagatttatgtttttt 23100673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 46991287 - 46991216
Alignment:
Q  164 tttctctctcgttcaatctaaataagtgatttttcacatagattttg-gttttttcttcatgatttcgtcatc 235  Q
    |||||||||  |||||||||||| ||||| ||||||||||||| | |  ||||||||||||||||| ||||||    
T  46991287 tttctctctatttcaatctaaatgagtga-ttttcacatagatctagatttttttcttcatgattttgtcatc 46991216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 46178490 - 46178576
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccgtctgtggtg 246  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||| | |||||||||||| |||||||||| ||||  |||||||    
T  46178490 tctttttctctctaattcaatctaaataagtgctttttcacatagatctaggttttttcttcgtgatttcgtcttccgagtgtggtg 46178576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 37169145 - 37169217
Alignment:
Q  161 ctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtca 233  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||| | | |||||||||| |||||||||||    
T  37169145 ctttttctctctaattcaatataaataagtgatttttcacatagatctagattttttcttcttgatttcgtca 37169217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 38440738 - 38440670
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 229  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||||  |||||||    
T  38440738 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttc 38440670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 22802935 - 22802990
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttt 215  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||| | ||||||    
T  22802935 tctttttctctctatttcaatctaaataagtgatttttcacgtagatctaggtttt 22802990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 47980809 - 47980750
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    ||||||||||||||||||||||||||||| || | ||| |||| ||| ||||||||||||    
T  47980809 ttcaatctaaataagtgatttttcacataaatctaggtcttttattcgtgatttcgtcat 47980750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 47990096 - 47990037
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    ||||||||||||||||||||||||||||| || | ||| |||| ||| ||||||||||||    
T  47990096 ttcaatctaaataagtgatttttcacataaatctaggtcttttattcgtgatttcgtcat 47990037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 47999383 - 47999324
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    ||||||||||||||||||||||||||||| || | ||| |||| ||| ||||||||||||    
T  47999383 ttcaatctaaataagtgatttttcacataaatctaggtcttttattcgtgatttcgtcat 47999324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 48008670 - 48008611
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    ||||||||||||||||||||||||||||| || | ||| |||| ||| ||||||||||||    
T  48008670 ttcaatctaaataagtgatttttcacataaatctaggtcttttattcgtgatttcgtcat 48008611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 4172480 - 4172536
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  4172480 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 4172536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 17237720 - 17237772
Alignment:
Q  164 tttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  17237720 tttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 17237772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 25631688 - 25631632
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  25631688 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 25631632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 39917555 - 39917483
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||| |  ||||||| |||||    
T  39917555 tttttctctctaattcaatctaaataagtga-ttttcacatagatctaggttttttccttgtgatttcatcatc 39917483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 46934556 - 46934630
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||| |||||||  |||||||||||||||||| |||||||||||||   |||||||||||  ||||||| |||||    
T  46934556 tctttctctctctatttcaatctaaataagtga-ttttcacatagatccaggttttttcttgttgatttcatcatc 46934630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 25162350 - 25162405
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  25162350 tctttttctctctatttcaatctaaataagtga--tttcacatagatctaggtttttt 25162405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 3850616 - 3850560
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  3850616 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 3850560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 29503378 - 29503450
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||| |  |||||||||||||| ||||||| ||||||||| | |||||||||||  ||||||| |||||    
T  29503378 tttttctctatatttcaatctaaataattgatttt-cacatagatctaggttttttctttgtgatttcatcatc 29503450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 35499362 - 35499306
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  35499362 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 35499306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 36906035 - 36906091
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||| ||||||||||| ||||||||||||||| ||||||||    
T  36906035 tctttttctctttatttcaatataaataagtga-ttttcacatagatttaggtttttt 36906091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 2342405 - 2342441
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttt 196  Q
    |||||||||||||  ||||||||||||||||||||||    
T  2342405 tctttttctctctatttcaatctaaataagtgatttt 2342441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 4178478 - 4178514
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttt 196  Q
    |||||||||||||  ||||||||||||||||||||||    
T  4178478 tctttttctctctatttcaatctaaataagtgatttt 4178514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 16235323 - 16235351
Alignment:
Q  175 ttcaatctaaataagtgatttttcacata 203  Q
    |||||||||||||||||||||||||||||    
T  16235323 ttcaatctaaataagtgatttttcacata 16235351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 15597312 - 15597251
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccg 237  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||    
T  15597312 ttcaatctaaataagtgatttt-cacatagatctaggttttttcttcatgatttcgtcatccg 15597251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 33342375 - 33342433
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtca 233  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||    
T  33342375 ttcaatctaaataagtgatttttcacatagatctaggttttttcttcgtgatttcgtca 33342433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 16794216 - 16794292
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccg 237  Q
    |||||||||||||  ||||||||||||||||||||||||||||| || | || ||||||||| ||||||| |||||||    
T  16794216 tctttttctctctaattcaatctaaataagtgatttttcacataaatctagg-tttttcttcgtgatttcatcatccg 16794292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 35580381 - 35580455
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||| ||||||||||||||| ||||||||| | |||||||||||| ||||||| |||||    
T  35580381 tctttttctctctatttcaatttaaataagtgatttt-cacatagatctaggttttttcttcgtgatttcatcatc 35580455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 28239756 - 28239830
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||| | |||||| ||| |  |||||||||||    
T  28239756 tctttttctctctatttcaatctaaataagtgttttttcacatagatctaggttttctctacgcgatttcgtcat 28239830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 11725604 - 11725679
Alignment:
Q  159 gtctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||| |  ||||||||||||||||| |||||||||||||| | |||||||||||  ||||||| |||||    
T  11725604 gtctttttctctttatttcaatctaaataagtg-tttttcacatagatctaggttttttctttttgatttcatcatc 11725679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 43192503 - 43192432
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||  ||||||||||||||||| ||||| |||||||| | |||||||||||| ||||||| |||||    
T  43192503 ttttctctctatttcaatctaaataagtggttttt-acatagatctaggttttttcttcgtgatttcatcatc 43192432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 11196828 - 11196887
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  11196828 ttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttcatcatc 11196887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 9498748 - 9498707
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||||||| ||||||||||||||| ||||||||    
T  9498748 ttcaatctaaataagtga-ttttcacatagatttaggtttttt 9498707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 39153291 - 39153217
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggt----tttttcttcatgatttcgtcatccgtctgtggtg 246  Q
    |||||| ||||||||||||||| ||||||||||| |||    ||||||||| |||||||||||||||  |||||||    
T  39153291 ttcaatttaaataagtgatttt-cacatagatttaggtattttttttcttcgtgatttcgtcatccgagtgtggtg 39153217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 9619519 - 9619463
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||||| | ||||||    
T  9619519 tctttttctctttatttcaatctaaataagtga-ttttcacatagatttagatttttt 9619463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 33298794 - 33298854
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatcc 236  Q
    |||||||||||||||||| ||||||||||||| | ||||||  |||  ||||||||||||||    
T  33298794 ttcaatctaaataagtga-ttttcacatagatctaggttttacctttgtgatttcgtcatcc 33298854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 17949171 - 17949226
Alignment:
Q  161 ctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||||  ||||||||||||||| || ||||||||||||| ||| ||||||    
T  17949171 ctttttctctctatttcaatctaaataagcga-ttttcacatagatcttgatttttt 17949226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 19876150 - 19876209
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||| |||||||||||||   |||||||||||  ||||||| |||||    
T  19876150 ttcaatctaaataagtga-ttttcacatagatcaaggttttttctttgtgatttcatcatc 19876209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 34489164 - 34489252
Alignment:
Q  160 tctttttctctctcgttcaatcta--aataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccgtctgtggtg 246  Q
    |||||||||||||  |||||| ||  ||||||||||||||||||||||| | |||||||||||| ||||||| |||||||  |||||||    
T  34489164 tctttttctctctaattcaatatataaataagtgatttttcacatagatctaggttttttcttcgtgatttcatcatccgagtgtggtg 34489252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 33543780 - 33543706
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||| |||||||||||||||||  | ||||||||| |||||||||||||    
T  33543780 tctttttctctatatttcaatctaaataagtaatttttcacatagatttaag-tttttcttcgtgatttcgtcatc 33543706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 33740739 - 33740683
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  33740739 tctttttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 33740683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 23947475 - 23947404
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  23947475 ttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttcatcatc 23947404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 33109750 - 33109824
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  33109750 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggttttttctttgtgatttcatcatc 33109824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 8196568 - 8196512
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  8196568 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 8196512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 12165772 - 12165816
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttctt 220  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||    
T  12165772 ttcaatctaaataagtgatttt-cacatagatttaggttttttctt 12165816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 8028279 - 8028204
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagat-tttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| |  | ||||||||| |||||||| |||||    
T  8028279 tctttttctctctgtttcaatctaaataagtga-ttttcacatagatctaagtttttttctttatgatttcatcatc 8028204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 16419074 - 16419149
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagat-tttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| |||| |||||||||  ||||||| |||||    
T  16419074 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctttgtttttttctttgtgatttcatcatc 16419149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 4468475 - 4468548
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    |||| ||||||||  |||||||||||||||||| |||||| |||||| | |||||||||||  ||||||| ||||    
T  4468475 tcttgttctctctatttcaatctaaataagtga-ttttcatatagatctaggttttttctttgtgatttcatcat 4468548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 12652856 - 12652901
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagat 206  Q
    |||||||||||||  |||||||||||||||||| |||||||||||||    
T  12652856 tctttttctctctatttcaatctaaataagtga-ttttcacatagat 12652901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 8266551 - 8266588
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgattttt 197  Q
    |||||||||||||  |||||||||||||||||||||||    
T  8266551 tctttttctctctacttcaatctaaataagtgattttt 8266588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 8496881 - 8496937
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  8496881 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 8496937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 17237445 - 17237377
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 229  Q
    ||||||||||| |  |||||||||||||||| | ||||||||||||| | |||||||||||  |||||||    
T  17237445 tctttttctctatatttcaatctaaataagtta-ttttcacatagatctaggttttttctttgtgatttc 17237377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 25064151 - 25064207
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  25064151 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 25064207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 25337501 - 25337572
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggtttttt-cttcatgatttcgtcatccgtctgtggtg 246  Q
    |||||||||||||| ||||||| |||||| || | |||||||| |||| |||||||||||||||  |||||||    
T  25337501 ttcaatctaaataaatgatttt-cacataaatctaggtttttttcttcgtgatttcgtcatccgagtgtggtg 25337572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 18569471 - 18569397
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttt-ttcttcatgatttcgtcat 234  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | |||||| |||||| ||||||||||||    
T  18569471 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttcttcttcgtgatttcgtcat 18569397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 34519054 - 34519127
Alignment:
Q  161 ctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  34519054 ctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttcatcatc 34519127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 39987310 - 39987395
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccgtctgtggtg 246  Q
    |||||||||||||  ||||||||||||||||||||||||| ||||| | | ||||||||||| |||||||  ||||||  |||||||    
T  39987310 tctttttctctctgattcaatctaaataagtgatttttcatataga-tctagttttttcttcgtgatttcaccatccgagtgtggtg 39987395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 14545440 - 14545514
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  14545440 tctttttctctatatttcaatctaaataagtga-ttttcacatagatctaggttttttctttgtgatttcatcatc 14545514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 38520694 - 38520620
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  ||| |||||||||||||| ||||||||||||| |  ||||||||||| ||||||| |||||    
T  38520694 tctttttctctctatttcgatctaaataagtga-ttttcacatagatctatgttttttcttcgtgatttcatcatc 38520620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 19716058 - 19716002
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||||| ||||||||    
T  19716058 tctttttctctttatttcaatctaaataagtga-ttttcacatagatttaggtttttt 19716002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 28035059 - 28035115
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  28035059 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 28035115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 25406445 - 25406370
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttgg-ttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | || |||||||||  |||||||||||||    
T  25406445 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttttctttgtgatttcgtcatc 25406370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 36882892 - 36882960
Alignment:
Q  7 tagaaaaatagcaagaaatgctattttctctgatggacattggagaattgaggttaaggatcctagaag 75  Q
    |||||||| |||||||||||||| |||   |||||| |||||||  ||| |||||||||||||||||||    
T  36882892 tagaaaaagagcaagaaatgctaatttgagtgatgggcattggaagattaaggttaaggatcctagaag 36882960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 27872659 - 27872725
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatt 227  Q
    |||||||| ||||  |||||||||||||||||| ||||||||||||| |  ||||||||||| |||||    
T  27872659 tctttttcgctctatttcaatctaaataagtga-ttttcacatagatctaagttttttcttcgtgatt 27872725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 51871784 - 51871858
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | | |||||||||  ||||||| |||||    
T  51871784 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctagcttttttctttgtgatttcatcatc 51871858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 9919309 - 9919354
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagat 206  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||    
T  9919309 tctttttctctctatttcaatctaaataagtgattttt-acatagat 9919354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 11453854 - 11453930
Alignment:
Q  160 tctttttctctctcg--ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||||||   ||||||||||||||||| |||| ||||||||| | |||||||||||  ||||||| |||||    
T  11453854 tctttttctctctctatttcaatctaaataagtggtttt-cacatagatctaggttttttctttgtgatttcatcatc 11453930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 25728120 - 25728064
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  25728120 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 25728064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 35584782 - 35584726
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  35584782 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 35584726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 50166260 - 50166204
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||| |||  ||||||||||||||||||  |||||||||||||| ||||||||    
T  50166260 tctttttctatctatttcaatctaaataagtga-atttcacatagatttaggtttttt 50166204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 51868806 - 51868750
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  51868806 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 51868750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 3871344 - 3871403
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||| ||||||||||||| |  ||||||||||  ||||||| |||||    
T  3871344 ttcaatctaaataagtga-ttttcacatagatctaagttttttctttgtgatttcatcatc 3871403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 5324718 - 5324682
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttt 196  Q
    |||||||||||||  ||||||||||||||||||||||    
T  5324718 tctttttctctctatttcaatctaaataagtgatttt 5324682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 30818506 - 30818470
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttt 196  Q
    |||||||||||||  ||||||||||||||||||||||    
T  30818506 tctttttctctctatttcaatctaaataagtgatttt 30818470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 15570828 - 15570914
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccgtctgtggtg 246  Q
    ||||||||||| |  |||||||||||||  ||||||||||||||||| | |||||||||||  ||||||||||| |||  |||||||    
T  15570828 tctttttctctataattcaatctaaatatttgatttttcacatagatgtaggttttttctttgtgatttcgtcacccgagtgtggtg 15570914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 19259974 - 19259928
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagat 206  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||    
T  19259974 tctttttctctctatttcaatctaaataagtgatttttcacatagat 19259928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 30298142 - 30298201
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||| |||||||| |||||    
T  30298142 ttcaatctaaataagtgatttt-cacatagatctaggttttttctttatgatttcatcatc 30298201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 21060442 - 21060368
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | |||||||||||| |||| || |||||    
T  21060442 tctttttctctatatttcaatctaaataagtga-ttttcacatagatgtaggttttttcttcgtgatgtcatcatc 21060368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 20257855 - 20257799
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  20257855 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 20257799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 2057999 - 2057924
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttgg-ttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | || ||||||||| |||||||| |||||    
T  2057999 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttttctttatgatttcatcatc 2057924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 7613214 - 7613144
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||  ||||||||||||||||| ||||||| |||||| | || |||||||||||||||| ||||||    
T  7613214 ttttctctctgtttcaatctaaataagtg-tttttcatatagatctagg-tttttcttcatgattttgtcatc 7613144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 11767726 - 11767802
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagat-tttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||||||||||||| ||||| | || |||||||||| |||| ||| ||||    
T  11767726 tctttttctctatatttcaatctaaataagtgatttttcacgtagatatatgtttttttcttcgtgatgtcgccatc 11767802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 27267019 - 27266965
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  27267019 tttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 27266965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 42579801 - 42579855
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||| |||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  42579801 tttttctttctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 42579855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 7241701 - 7241757
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  7241701 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 7241757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 7246877 - 7246933
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  7246877 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 7246933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 10649372 - 10649428
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  10649372 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 10649428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 16981211 - 16981283
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||  |||||||||||||||||| ||| |||||| || | |||||||||||  ||||||| |||||    
T  16981211 tttttctctctatttcaatctaaataagtga-tttacacatatatctaggttttttctttgtgatttcatcatc 16981283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 18677627 - 18677571
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  || ||||||||||||||| ||||||||||||| | ||||||||    
T  18677627 tctttttctctctattttaatctaaataagtga-ttttcacatagatctaggtttttt 18677571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 26578168 - 26578224
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  26578168 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 26578224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 28097086 - 28097142
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggtt-ttttcttcatgatttcgt 231  Q
    |||||| ||||||||||| |||||||||| |||| |||| ||||||||||||||||||    
T  28097086 ttcaatataaataagtga-ttttcacataaatttaggttattttcttcatgatttcgt 28097142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 30371643 - 30371699
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  30371643 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 30371699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 34881631 - 34881687
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttctt 220  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | | |||||||||    
T  34881631 ttttctctctatttcaatctaaataagtga-ttttcacatagatctagtttttttctt 34881687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 27751860 - 27751919
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||| ||||||||||||||| ||||||||| | |||||||||||  ||||||| |||||    
T  27751860 ttcaatataaataagtgatttt-cacatagatctaggttttttctttgtgatttcatcatc 27751919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 42886401 - 42886471
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||  ||||||| ||||||||| |||| ||||||||||| || ||||||||| ||||||| |||||    
T  42886401 ttttctctctatttcaatcaaaataagtgctttt-cacatagatttagg-tttttcttcgtgatttcatcatc 42886471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 8636 - 8710
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||| |||||  |||||||||||||||||| ||||||||||||| | |||||||||||  ||||||| |||||    
T  8636 tctttttatctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttgtgatttcatcatc 8710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 4192759 - 4192833
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||||| |||||||||| |||| |||||||||||  ||||||| |||||    
T  4192759 tctttttctctatatttcaatctaaataagtga-ttttcacatatatttaggttttttctttgtgatttcatcatc 4192833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 17319246 - 17319317
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||| |||  |||||||||||||| |   ||||||||||||| | ||||||||||||||||||||||||||    
T  17319246 tttttctatctatttcaatctaaataacta--ttttcacatagatctaggttttttcttcatgatttcgtcatc 17319317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 26025570 - 26025497
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcat 234  Q
    |||||||||||||  |||||||||||||||||  ||||||||||||| | |||||||||||  ||||||| ||||    
T  26025570 tctttttctctctatttcaatctaaataagtg-gttttcacatagatctaggttttttctttgtgatttcatcat 26025497  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 3725101 - 3725169
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 229  Q
    |||||||||||||  |||||| ||||||||||| ||||||||||||| ||| |||||||||  |||||||    
T  3725101 tctttttctctctatttcaatataaataagtga-ttttcacatagatcttgattttttctttgtgatttc 3725169  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 6173552 - 6173608
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  6173552 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 6173608  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 20047243 - 20047187
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  |||||||||||||||||| |||| |||||||||| ||||||||    
T  20047243 tctttttctctctttttcaatctaaataagtgactttt-acatagatttaggtttttt 20047187  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 31581880 - 31581812
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 229  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | | |||||||||  |||||||    
T  31581880 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctagtttttttctttttgatttc 31581812  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 22421659 - 22421730
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||  ||||||||||||||||||  |||||||||||| | |||||||||||  ||||||| |||||    
T  22421659 ttttctctctatttcaatctaaataagtga-ctttcacatagatctaggttttttctttgtgatttcatcatc 22421730  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 40626189 - 40626114
Alignment:
Q  159 gtctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||||||  ||||||||||||||| || ||||||||||||| |  ||||||||||  ||||||| |||||    
T  40626189 gtctttttctctctatttcaatctaaataaggga-ttttcacatagatctacgttttttctttgtgatttcatcatc 40626114  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 7015871 - 7015797
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||| ||||||| ||||||||||| ||||||||| |  ||||||| |||||    
T  7015871 tctttttctctttatttcaatctaaataattgatttt-cacatagatttaggttttttccttgtgatttcatcatc 7015797  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 8308097 - 8308176
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatccgtctgtgg 244  Q
    ||||| |||||  ||||||||||||  |||||||| ||||||||| | |||||||||||| ||||||||||||| | ||||||    
T  8308097 tttttttctctaattcaatctaaat--gtgatttt-cacatagatctaggttttttcttcgtgatttcgtcatctgactgtgg 8308176  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 34598908 - 34598982
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | | |||||| ||  ||||||| |||||    
T  34598908 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctagtttttttttttgtgatttcatcatc 34598982  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 41712923 - 41712870
Alignment:
Q  163 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||  || ||||||||||||||| ||||||||||||||| ||||||||    
T  41712923 ttttctctctattttaatctaaataagtga-ttttcacatagatttaggtttttt 41712870  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 8971769 - 8971713
Alignment:
Q  178 aatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||||||||||| ||||||||| | |||||||||||  ||||||| |||||    
T  8971769 aatctaaataagtgatttt-cacatagatctaggttttttctttgtgatttcatcatc 8971713  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 27249312 - 27249256
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  27249312 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 27249256  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 30420597 - 30420653
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  30420597 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 30420653  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 32680743 - 32680687
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  32680743 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 32680687  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 3270374 - 3270315
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||| ||||||||||||| | |||||||| ||  ||||||| |||||    
T  3270374 ttcaatctaaataagtga-ttttcacatagatctaggttttttttttgtgatttcatcatc 3270315  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 18694970 - 18695013
Alignment:
Q  162 tttttctctctcgttcaatctaaataagtgatttttcacatagat 206  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||    
T  18694970 tttttctctctatttcaatctaaataagtgattttt-acatagat 18695013  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 32913177 - 32913236
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||| ||||||||||||||| ||||||||| | |||||||||||  ||||||| |||||    
T  32913177 ttcaatttaaataagtgatttt-cacatagatctaggttttttctttgtgatttcatcatc 32913236  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 36323799 - 36323850
Alignment:
Q  180 tctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtc 232  Q
    ||||||||||||||||| ||||||||||| ||||||||||   ||||||||||    
T  36323799 tctaaataagtgatttt-cacatagatttaggttttttctctgtgatttcgtc 36323850  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 40660077 - 40660018
Alignment:
Q  175 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    |||||||||||||||||| ||||||||||||| | | |||||||||  ||||||| |||||    
T  40660077 ttcaatctaaataagtga-ttttcacatagatctagattttttctttgtgatttcatcatc 40660018  T

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Target: scaffold0146 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 16479 - 16427
Alignment:
Q  164 tttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 217  Q
    |||||||||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  16479 tttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 16427  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 201532 - 201458
Alignment:
Q  160 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcgtcatc 235  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | | |||||||||  ||||||| |||||    
T  201532 tctttttctctatatttcaatctaaataagtga-ttttcacatagatctagattttttctttgtgatttcatcatc 201458  T

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