View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_124 (Length: 251)
Name: NF1376_high_124
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_124 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 1538928 - 1538826
Alignment:
| Q |
137 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
236 |
Q |
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| T |
1538928 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
1538829 |
T |
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| Q |
237 |
tat |
239 |
Q |
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||| |
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| T |
1538828 |
tat |
1538826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 17768975 - 17768873
Alignment:
| Q |
137 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17768975 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
17768876 |
T |
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| Q |
237 |
tat |
239 |
Q |
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||| |
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| T |
17768875 |
tat |
17768873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25777324 - 25777280
Alignment:
| Q |
1 |
ggtactttgagtttccatattaaatttcaccgacctaaaacatgt |
45 |
Q |
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| T |
25777324 |
ggtactttgagtttccatattaaatttcaccgacctaaaacatgt |
25777280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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