View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376_high_125 (Length: 251)

Name: NF1376_high_125
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376_high_125
NF1376_high_125
[»] chr2 (11 HSPs)
chr2 (1-219)||(38903881-38904100)
chr2 (1-45)||(27244652-27244696)
chr2 (1-43)||(1238159-1238201)
chr2 (1-43)||(9519736-9519778)
chr2 (1-47)||(10332297-10332343)
chr2 (1-45)||(11560493-11560537)
chr2 (1-45)||(20455886-20455930)
chr2 (1-41)||(28202296-28202336)
chr2 (1-45)||(29544622-29544666)
chr2 (1-45)||(33063981-33064025)
chr2 (3-39)||(34242823-34242859)
[»] chr5 (11 HSPs)
chr5 (1-45)||(19759924-19759968)
chr5 (1-45)||(40715971-40716015)
chr5 (1-45)||(42473889-42473933)
chr5 (1-52)||(6488995-6489046)
chr5 (6-45)||(18041298-18041337)
chr5 (1-45)||(5485181-5485225)
chr5 (1-45)||(15889406-15889450)
chr5 (1-45)||(22522823-22522867)
chr5 (1-45)||(27721697-27721741)
chr5 (1-45)||(32200469-32200513)
chr5 (1-45)||(34436846-34436890)
[»] chr3 (7 HSPs)
chr3 (1-45)||(28918912-28918956)
chr3 (4-45)||(4222868-4222909)
chr3 (1-45)||(11508505-11508549)
chr3 (1-45)||(18870747-18870791)
chr3 (1-45)||(38387967-38388011)
chr3 (1-45)||(41168160-41168204)
chr3 (1-45)||(53162193-53162237)
[»] chr4 (7 HSPs)
chr4 (1-45)||(2932118-2932162)
chr4 (2-47)||(56309323-56309368)
chr4 (1-45)||(13276124-13276168)
chr4 (1-45)||(20799416-20799460)
chr4 (1-45)||(36203231-36203275)
chr4 (1-45)||(50362161-50362205)
chr4 (1-45)||(56565005-56565049)
[»] chr1 (5 HSPs)
chr1 (1-45)||(30279642-30279686)
chr1 (1-45)||(17139539-17139583)
chr1 (1-45)||(21400045-21400089)
chr1 (1-45)||(33020065-33020109)
chr1 (1-45)||(49222811-49222855)
[»] chr6 (4 HSPs)
chr6 (6-45)||(3054027-3054066)
chr6 (1-42)||(29069481-29069522)
chr6 (1-45)||(7083014-7083058)
chr6 (1-45)||(18256878-18256922)
[»] scaffold1149 (1 HSPs)
scaffold1149 (1-42)||(2330-2371)
[»] chr8 (7 HSPs)
chr8 (1-45)||(2489676-2489719)
chr8 (1-45)||(8837915-8837959)
chr8 (1-45)||(11708981-11709025)
chr8 (1-45)||(27718916-27718960)
chr8 (1-45)||(33445565-33445609)
chr8 (1-45)||(39821879-39821923)
chr8 (1-45)||(42200684-42200728)
[»] chr7 (3 HSPs)
chr7 (1-45)||(26825419-26825463)
chr7 (1-45)||(35142171-35142215)
chr7 (1-45)||(43539126-43539170)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 38904100 - 38903881
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgaggatacataacaatattttattaaaaaaggaacaatctatcttaaaatgaaagtttat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||    
T  38904100 atatattatgcattgtatctatcaatcgagctaagctcacgaggatacataacaatattttattaaaaaaggaacaatctatcttaaaaagggagtttat 38904001  T
Q  101 ttttatcttatatatcaaaataatttgagtgaggtatatgttaaaaagtttataatcaaatataataata--nnnnnnnaatccaaaagtgatgtaagaa 198  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||         ||| |||||||||||||||||    
T  38904000 ttttatcttatatatcaaaataatttgagtggggtatatgttaaaaagtttataatcaaatataataatatttttttttaat-caaaagtgatgtaagaa 38903902  T
Q  199 gcggcacacaaaatatattaa 219  Q
    |||||||||||||||||||||    
T  38903901 gcggcacacaaaatatattaa 38903881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27244696 - 27244652
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||    
T  27244696 atatattatgcattgtccctatcaactgagctaagctcacgagga 27244652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1238201 - 1238159
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgag 43  Q
    |||||||||||||||| ||||||||| ||| ||||||||||||    
T  1238201 atatattatgcattgtccctatcaattgagttaagctcacgag 1238159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9519736 - 9519778
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgag 43  Q
    |||||||||||||||| | ||||||| ||||||||||||||||    
T  9519736 atatattatgcattgtccatatcaattgagctaagctcacgag 9519778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10332297 - 10332343
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgaggata 47  Q
    |||||||||||||||| | ||||||  ||||||||||||||||||||    
T  10332297 atatattatgcattgtccttatcaactgagctaagctcacgaggata 10332343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11560537 - 11560493
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| |||| |||||||||||| |||||    
T  11560537 atatattatgcattgtccctaccaattgagctaagctcatgagga 11560493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20455930 - 20455886
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| | || |||| ||||||||||||||||||    
T  20455930 atatattatgcattgtccataccaattgagctaagctcacgagga 20455886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28202336 - 28202296
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacg 41  Q
    |||||||||||||||| ||||||||  ||||||||||||||    
T  28202336 atatattatgcattgtccctatcaactgagctaagctcacg 28202296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29544666 - 29544622
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| |||| ||||||||||||| ||||    
T  29544666 atatattatgcattgtccctaccaattgagctaagctcactagga 29544622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33064025 - 33063981
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| | ||||||  ||||||||||||||||||    
T  33064025 atatattatgcattgtccatatcaactgagctaagctcacgagga 33063981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 34242859 - 34242823
Alignment:
Q  3 atattatgcattgtacctatcaatcgagctaagctca 39  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  34242859 atattatgcattgtccctatcaattgagctaagctca 34242823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19759968 - 19759924
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||    
T  19759968 atatattatgcattgtacctaccaattgagctaagctcacgagga 19759924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40715971 - 40716015
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| | ||||||| ||||||||||||||||||    
T  40715971 atatattatgcattgtccatatcaattgagctaagctcacgagga 40716015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42473933 - 42473889
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| || |||||| ||||||||||||||||||    
T  42473933 atatattatgcattgttccaatcaattgagctaagctcacgagga 42473889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6489046 - 6488995
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgaggatacataa 52  Q
    |||||||||||||||| |||| |||  |||||||||||||||||| ||||||    
T  6489046 atatattatgcattgtccctaccaactgagctaagctcacgaggacacataa 6488995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 18041298 - 18041337
Alignment:
Q  6 ttatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  18041298 ttatgcattgttcctatcaattgagctaagctcacgagga 18041337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5485225 - 5485181
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| |||  ||||||||||||||||||    
T  5485225 atatattatgcattgtccctaccaactgagctaagctcacgagga 5485181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15889450 - 15889406
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| |||  ||||||||||||||||||    
T  15889450 atatattatgcattgtccctaccaactgagctaagctcacgagga 15889406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22522823 - 22522867
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| | || ||| |||||||||||||||||||    
T  22522823 atatattatgcattgtccataccaaccgagctaagctcacgagga 22522867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27721697 - 27721741
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| |||  ||||||||||||||||||    
T  27721697 atatattatgcattgttcctaccaactgagctaagctcacgagga 27721741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32200469 - 32200513
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| ||| ||||  ||||||||||||||||||    
T  32200469 atatattatgcattgtccctgtcaactgagctaagctcacgagga 32200513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34436890 - 34436846
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| |||  ||||||||||||||||||    
T  34436890 atatattatgcattgtccctaccaactgagctaagctcacgagga 34436846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28918912 - 28918956
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||    
T  28918912 atatattatgcattgtacctaccaaccgagctaagctcacgagga 28918956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 4222909 - 4222868
Alignment:
Q  4 tattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    ||||||||||||| | || |||||||||||||||||||||||    
T  4222909 tattatgcattgtccttaccaatcgagctaagctcacgagga 4222868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11508505 - 11508549
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||| ||||||||| | |||||| |||||||||||||||||||    
T  11508505 atatatcatgcattgtccatatcaaccgagctaagctcacgagga 11508549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18870747 - 18870791
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| |||  ||||||||||||||||||    
T  18870747 atatattatgcattgtccctaccaactgagctaagctcacgagga 18870791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38388011 - 38387967
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    ||||||||||||||||  |||||||  ||||||||||||||||||    
T  38388011 atatattatgcattgtcactatcaactgagctaagctcacgagga 38387967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41168160 - 41168204
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||||||| |||| |||||| |||||||    
T  41168160 atatattatgcattgttcctatcaaccgagttaagcttacgagga 41168204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 53162237 - 53162193
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||| ||||||||||| | ||||||| ||||||||||||||||||    
T  53162237 atattttatgcattgtccatatcaattgagctaagctcacgagga 53162193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2932162 - 2932118
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||    
T  2932162 atatattatgcattgtccctatcaacagagctaagctcacgagga 2932118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 56309323 - 56309368
Alignment:
Q  2 tatattatgcattgtacctatcaatcgagctaagctcacgaggata 47  Q
    ||||||||||||||| | ||||||| ||| ||||||||||||||||    
T  56309323 tatattatgcattgtccatatcaattgagttaagctcacgaggata 56309368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13276168 - 13276124
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| |||| ||| ||||||||||||||    
T  13276168 atatattatgcattgtccctaccaattgagttaagctcacgagga 13276124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20799416 - 20799460
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| |||  ||||||||||||||||||    
T  20799416 atatattatgcattgtccctaccaactgagctaagctcacgagga 20799460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36203275 - 36203231
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| | ||||||  ||||||||||||||||||    
T  36203275 atatattatgcattgtccttatcaactgagctaagctcacgagga 36203231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50362161 - 50362205
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| |||  ||||||||||||||||||    
T  50362161 atatattatgcattgtccctaccaactgagctaagctcacgagga 50362205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 56565005 - 56565049
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||| ||||||||||| | ||||||| ||||||||||||||||||    
T  56565005 atattttatgcattgtccatatcaattgagctaagctcacgagga 56565049  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30279642 - 30279686
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||| ||||||||||||||  ||||||||||||||||||    
T  30279642 atatattatgtattgtacctatcaactgagctaagctcacgagga 30279686  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17139539 - 17139583
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| |||  ||||||||||||||||||    
T  17139539 atatattatgcattgtccctaccaactgagctaagctcacgagga 17139583  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21400045 - 21400089
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| |||  ||||||||||||||||||    
T  21400045 atatattatgcattgtccctaccaactgagctaagctcacgagga 21400089  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33020065 - 33020109
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| || | ||||||||||||||||||    
T  33020065 atatattatgcattgtccctaccagttgagctaagctcacgagga 33020109  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 49222855 - 49222811
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    ||||||| |||||||| ||||||||| ||| ||||||||||||||    
T  49222855 atatattgtgcattgttcctatcaattgagttaagctcacgagga 49222811  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 3054027 - 3054066
Alignment:
Q  6 ttatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  3054027 ttatgcattgttcctatcaattgagctaagctcacgagga 3054066  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29069522 - 29069481
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacga 42  Q
    |||||||||||||||| ||||||||  |||||||||||||||    
T  29069522 atatattatgcattgtccctatcaactgagctaagctcacga 29069481  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7083014 - 7083058
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| | || |||| ||||||||||||||||||    
T  7083014 atatattatgcattgtccttaccaattgagctaagctcacgagga 7083058  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18256922 - 18256878
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| | ||||||  ||||||||||||||||||    
T  18256922 atatattatgcattgtccttatcaactgagctaagctcacgagga 18256878  T

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Target: scaffold1149 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2371 - 2330
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacga 42  Q
    |||||||||||||||| |||| ||| ||||||||||||||||    
T  2371 atatattatgcattgtccctaccaaccgagctaagctcacga 2330  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2489719 - 2489676
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| ||| |||| |||||||||||||||||||    
T  2489719 atatattatgcattgtccct-tcaaccgagctaagctcacgagga 2489676  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8837959 - 8837915
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||||||| |||| |||| |||||||||    
T  8837959 atatattatgcattgtccctatcaaccgagttaagttcacgagga 8837915  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11709025 - 11708981
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| |||  ||||||||||||||||||    
T  11709025 atatattatgcattgtccctaccaactgagctaagctcacgagga 11708981  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27718916 - 27718960
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| | ||||||  ||||||||||||||||||    
T  27718916 atatattatgcattgtccatatcaactgagctaagctcacgagga 27718960  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33445609 - 33445565
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| |||  ||||||||||||||||||    
T  33445609 atatattatgcattgttcctaccaactgagctaagctcacgagga 33445565  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39821923 - 39821879
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| |||| |||  ||||||||||||||||||    
T  39821923 atatattatgcattgtccctaccaactgagctaagctcacgagga 39821879  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 42200684 - 42200728
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    ||||||||| |||||| ||||||||  ||||||||||||||||||    
T  42200684 atatattatacattgtccctatcaactgagctaagctcacgagga 42200728  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26825419 - 26825463
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| | ||||||| ||| ||||||||||||||    
T  26825419 atatattatgcattgtccatatcaattgaggtaagctcacgagga 26825463  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35142171 - 35142215
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| | ||||||  ||||||||||||||||||    
T  35142171 atatattatgcattgtccatatcaactgagctaagctcacgagga 35142215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43539126 - 43539170
Alignment:
Q  1 atatattatgcattgtacctatcaatcgagctaagctcacgagga 45  Q
    |||||||||||||||| ||||||||  ||||||||||||| ||||    
T  43539126 atatattatgcattgttcctatcaactgagctaagctcacaagga 43539170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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