View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_127 (Length: 251)
Name: NF1376_high_127
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_127 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 34327389 - 34327201
Alignment:
| Q |
53 |
atgtaaatgtattaagagaatgagatcattataaagtttgatgaattgctggaattttttcgggctctttatgaagattatgaggatgatgagggctatg |
152 |
Q |
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| T |
34327389 |
atgtaaatgtattaagagaatgagataattataaagtttgatgaattgctggaattttttcggactttttatgaaggttatgaggatgatgagggctatg |
34327290 |
T |
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| Q |
153 |
ttggttaatttgtttatgttggttgtgttttatggaattctttgattgatttatattctgttaaataagaactgggttgttgttctgtg |
241 |
Q |
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| T |
34327289 |
ttggttaatttgtttatgttggttgtgttttatggaattctttgattgatttatattctgttaaacgagaactgagttgttgttttgtg |
34327201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 40723917 - 40723729
Alignment:
| Q |
53 |
atgtaaatgtattaagagaatgagatcattataaagtttgatgaattgctggaattttttcgggctctttatgaagattatgaggatgatgagggctatg |
152 |
Q |
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| T |
40723917 |
atgtaaatgtattaagagaatgagataattataaagtttgatgaattgctgaaattttttcgagctttttatgaagattatgaggatgatgagggttatg |
40723818 |
T |
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| Q |
153 |
ttggttaatttgtttatgttggttgtgttttatggaattctttgattgatttatattctgttaaataagaactgggttgttgttctgtg |
241 |
Q |
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| T |
40723817 |
ttggttaatttgtttatgttggttgtgttttatggaattctttgattgatttatattctgttaaatgagagttgggttgttgttttgtg |
40723729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40723971 - 40723936
Alignment:
| Q |
1 |
ttatttatggtcacaattgattaattgtttcgttaa |
36 |
Q |
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| T |
40723971 |
ttatttatggtcacaatcgattaattgtttcgttaa |
40723936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 59 - 241
Target Start/End: Original strand, 48096469 - 48096651
Alignment:
| Q |
59 |
atgtattaagagaatgagatcattataaagtttgatgaattgctggaattttttcgggctctttatgaagattatgaggatgatgagggctatgttggtt |
158 |
Q |
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| T |
48096469 |
atgtattaagagaatgagataattataaagtttgatgaattgctgaaattttttcgggctttttatgaagattatgaggatgatgagggttatgttggtt |
48096568 |
T |
|
| Q |
159 |
aatttgtttatgttggttgtgttttatggaattctttgattgatttatattctgttaaataagaactgggttgttgttctgtg |
241 |
Q |
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| T |
48096569 |
aatttgtttatgttggttgtgttttatggaattctttgattgatttatattctgttaaatgagagttgggttgttgttttgtg |
48096651 |
T |
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