View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_149 (Length: 212)
Name: NF1376_high_149
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_149 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 45729916 - 45730099
Alignment:
| Q |
1 |
tgtttttgataaacaaattacttactttgcagtttatagcttatagtttgagttacttttataaaaagttgttgttttcgtacaagttttaagctatttt |
100 |
Q |
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| T |
45729916 |
tgtttttgataaacaaattacttactttgcagtttatagcttatagtttgagttacttttataaaaagttgttgttttcgtacaagttttaagctatttt |
45730015 |
T |
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| Q |
101 |
catatannnnnnnagagagtatatcaaaaccttgttgcatgaacactcctgattgaaggtgtgtattttaatgtatgacacgcat |
185 |
Q |
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| T |
45730016 |
catata-ttttttagagagtatatgaaaactttgttgcatggacacttctgattgaaggtgtgtattttaatgtatgacacgcat |
45730099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 45725723 - 45725768
Alignment:
| Q |
21 |
cttactttgcagtttatagcttatagtttgagttacttttataaaa |
66 |
Q |
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| T |
45725723 |
cttattttgcagtttatagcttatagtttgcgttacttttataaaa |
45725768 |
T |
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