View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_16 (Length: 571)
Name: NF1376_high_16
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 93 - 415
Target Start/End: Original strand, 36378808 - 36379133
Alignment:
| Q |
93 |
aaaactcagggtcttctttctatcttccacttcctttttggttcggaaatatgaaattgaattgaattaaagaataagatgggaataaatttcacaatta |
192 |
Q |
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| T |
36378808 |
aaaactcagggtcttctttctatcttcaatttcctttttggttcggaaatatgaaattgaattgaattaaagaataagatgggaataaatttcacaatta |
36378907 |
T |
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| Q |
193 |
cgaattgtctatttctatcacctcttcatctttatttcaacccaaaagttcaatatttcatttcattcgtggctccacttctctgtgtttggtaaaggta |
292 |
Q |
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| T |
36378908 |
cgaattgtctatttctatcaactctttatctttatttcaacccaaaagttcaatatttcatttcattcgtggctccacatctctgtgtttggtaaaggta |
36379007 |
T |
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| Q |
293 |
gaagaagtcctcttaatttataactc--taacaattatttttacttgtgaactagtcgatgtgggctc-tatgatttgtatacgtagaagtttcctgtgt |
389 |
Q |
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| T |
36379008 |
gaataagtcctcttaatttataactctataacaattatttttacttgtgaactagtcgatgtgggctcttatgatttgtatacgtagaagtttcctgtgt |
36379107 |
T |
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| Q |
390 |
cacacttctctcccaatccataaatg |
415 |
Q |
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| T |
36379108 |
cacacttctctcccaatccataaatg |
36379133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 482 - 557
Target Start/End: Original strand, 36379199 - 36379274
Alignment:
| Q |
482 |
cttcagtactcaattccatgtttaatggaagatattaaaaggaatattatcactattatatatttacaagatcctc |
557 |
Q |
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| T |
36379199 |
cttcagtactcaattccatgtttaatggaagatattaaaaggaatattatcactattatatatttacaagatcctc |
36379274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 36368374 - 36368440
Alignment:
| Q |
105 |
cttctttctatcttccacttcctttttggttcggaaatatgaaattgaattgaattaaagaataaga |
171 |
Q |
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| T |
36368374 |
cttctttctatcttccatttcctttttggttcgcaaatatgaaattgaattgaatcaaagaataaga |
36368440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 36368461 - 36368549
Alignment:
| Q |
161 |
aaagaataagatggg-aataaatttcacaattacgaattgtctatttctatcacctcttcatctttatttcaacccaaaagttcaatatttcat |
253 |
Q |
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| T |
36368461 |
aaagaataagatggggaataaatttcacaattacgaattggctatttcta-----ccttcatcttcgtttcaacccaaaagtgcaatatttcat |
36368549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 36375873 - 36375924
Alignment:
| Q |
330 |
tttacttgtgaactagtcgatgtgggctc-tatgatttgtatacgtagaagt |
380 |
Q |
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| T |
36375873 |
tttacttgtgaactggtcgatgtgggttcttatgatttgtatacatagaagt |
36375924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 378
Target Start/End: Original strand, 36383216 - 36383268
Alignment:
| Q |
327 |
atttttacttgtgaactagtcgatgtgggctc-tatgatttgtatacgtagaa |
378 |
Q |
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| T |
36383216 |
atttttacctgtgaactggtcgatgtgggctcttgtgatttgtatacatagaa |
36383268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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