View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_20 (Length: 527)
Name: NF1376_high_20
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 64 - 477
Target Start/End: Original strand, 39973781 - 39974193
Alignment:
| Q |
64 |
agaacctgtgcatatcaaataattaaatataaatcaatgttgcaattaaccattggaaggttggatagcaaataaaattaaaaatcaatggtaggagatg |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39973781 |
agaacctgtgcatatcaaataattaaatataaatcaatgttgcaattaaccattggaaggttggatagcaaataaaattaaaaatcaatggtaggagatg |
39973880 |
T |
|
| Q |
164 |
atgcacctattccaatcaaggcctttgactgtattgtattcatcagaataccttgtgattgagaaagactatcaattatttcaaatccaacctaacacat |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39973881 |
atgcacctattccaatcaaggcctttgactgtattgtattcatcagaataccttgtgattgagaaagactatcaattatttcaaatccaacctaacacat |
39973980 |
T |
|
| Q |
264 |
acaaaaccataagattagaataacgacaaatagaaaaacattgattcaaacactttgggtgcacgtttgaaatagtcaaaattgattatagagttgtaga |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39973981 |
acaaaaccataagattagaataacgacaaatagaaaaacattgattcaaacactttgggtgcacgtttgaaatagtcaaaattgattatagagttgtaga |
39974080 |
T |
|
| Q |
364 |
attgattttaaaaagttcagttgctctcgagcaaaattggtcttacctccagagtcaattctaacttgaaagctaaaaatggaagcttttgattttaaaa |
463 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39974081 |
attgattttaaaatgttcagttgctctcgagcaaaattggtcttacctccagagtcaattctaacttg-aagctaaaaatggaagcttttgattttaaaa |
39974179 |
T |
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| Q |
464 |
ttgattataacact |
477 |
Q |
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|||||||||||||| |
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| T |
39974180 |
ttgattataacact |
39974193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 64 - 318
Target Start/End: Original strand, 31515635 - 31515895
Alignment:
| Q |
64 |
agaacctgtgcatatcaaataattaaatataaatcaatgttgcaattaaccattggaaggttggatagcaaataaaattaaa------aatcaatggtag |
157 |
Q |
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||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||||||| ||| |||||||||||| |
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| T |
31515635 |
agaacctgtacatatcaaataattaaatataaataaatgctgcaattaaccattggaaggttcaatagtaaataaaataaaataaaaaaatcaatggtag |
31515734 |
T |
|
| Q |
158 |
gagatgatgcacctattccaatcaaggcctttgactgtattgtattcatcagaataccttgtgattgagaaagactatcaattatttcaaatccaaccta |
257 |
Q |
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| T |
31515735 |
gagatgatgcacctattccaatcaaggcttttgactgtattgtattcatcagaataccttctgattgagaaagactatcaattatttcaaatccaaccta |
31515834 |
T |
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| Q |
258 |
acacatacaaaaccataagattagaataacgacaaatagaaaaacattgattcaaacactt |
318 |
Q |
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||| ||||||| ||| ||||||||| || ||||| |||| ||||||||||||||||||| |
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| T |
31515835 |
acaaatacaaagagatatgattagaatcactacaaacagaagaacattgattcaaacactt |
31515895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 469
Target Start/End: Original strand, 31515905 - 31515978
Alignment:
| Q |
395 |
caaaattggtcttacctccagagtcaattctaacttgaaagctaaaaatggaagcttttgattttaaaattgatt |
469 |
Q |
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|||||||| | ||||||||||||||| |||||||||| |||||| | || ||||||||||||||||||||||||| |
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| T |
31515905 |
caaaattgattttacctccagagtcacttctaacttg-aagctatagattgaagcttttgattttaaaattgatt |
31515978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 913229 - 913263
Alignment:
| Q |
7 |
gttgttatatactatcatcaatgcctttcttcttg |
41 |
Q |
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| T |
913229 |
gttgttatatactatcatcaatgcctttcttcttg |
913263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 370
Target Start/End: Complemental strand, 41773914 - 41773878
Alignment:
| Q |
334 |
aatagtcaaaattgattatagagttgtagaattgatt |
370 |
Q |
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|||||||||||||||||||||||||||| |||||||| |
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| T |
41773914 |
aatagtcaaaattgattatagagttgtaaaattgatt |
41773878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 372
Target Start/End: Original strand, 35995150 - 35995182
Alignment:
| Q |
340 |
caaaattgattatagagttgtagaattgatttt |
372 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
35995150 |
caaaattgattctagagttgtagaattgatttt |
35995182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 477
Target Start/End: Original strand, 44439256 - 44439311
Alignment:
| Q |
421 |
attctaacttgaaagctaaaaatggaagcttttgattttaaaattgattataacact |
477 |
Q |
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||||||||||||| ||||||| | | ||||||||||| ||||||||||| ||||||| |
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| T |
44439256 |
attctaacttgaa-gctaaaatttggagcttttgattctaaaattgattttaacact |
44439311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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