View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_27 (Length: 492)
Name: NF1376_high_27
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 31 - 479
Target Start/End: Original strand, 24991185 - 24991646
Alignment:
| Q |
31 |
ttttaatgtgcaaataattatattcttctattatttttaggtgataaagctggataatttcatcactcacgagcttccctttgacgagataaaccaagcc |
130 |
Q |
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| T |
24991185 |
ttttaatgtgcaaataattatattcttctattatttttaggcgataaagttggataatttcatcactcacgagcttccctttgatgagataaaccaagcc |
24991284 |
T |
|
| Q |
131 |
ttcgatcttttgattgccgggaagtcattgagatgtgttctaacactctaagagaagacatacnnnnnnnncttcattcagatagagagcactctccagt |
230 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24991285 |
ttcaatcttttgattgccgggaagtcattgagatgtgttcttacactctaagagaagacatacttttttttcttcattcagatagagagcactctccagt |
24991384 |
T |
|
| Q |
231 |
tttatgatatctgagttcttgattagaagtacatataaatataaatatgtaataaagtttgtgaacagttattacacagcattatcttactgtgaagtgt |
330 |
Q |
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| T |
24991385 |
tttatgatatctgagttcttgattagaagtatatataaatataaatatgtaataaagtttgtgaacagttattacacagcattatcttactgtgaagtgt |
24991484 |
T |
|
| Q |
331 |
gttacaagttaccacggccaaggaagaaaagtggaagtgtactcaagtttgttcatcttccaacatttggtgatagagaatgctggggatttcta----- |
425 |
Q |
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| T |
24991485 |
gttacaagttaccacggccaaggaagaaaagtagaagtgtattcaagtttgttcatcttccaacatttggtgatagagaatgctggggatttctatttct |
24991584 |
T |
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| Q |
426 |
-------tttctttattttttgca-cctgtaaataaatgttcatgtcgaaggaattctagta |
479 |
Q |
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| T |
24991585 |
atttctttttctttattttttgcaccctgtaaataaatgtttatgtcgaaggaattctagta |
24991646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 30 - 331
Target Start/End: Original strand, 24994853 - 24995151
Alignment:
| Q |
30 |
gttttaatgtgcaaataattatattcttctattatttttaggtgataaagctggataatttcatcactcacgagcttccctttgacgagataaaccaagc |
129 |
Q |
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|||||| ||| ||| ||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
24994853 |
gttttagtgtccaagtaattatattcttctattatttttaggcgataaagttggatgatttcatcactcacgaacttccctttgacgagataaacaaagc |
24994952 |
T |
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| Q |
130 |
cttcgatcttttgattgccgggaagtcattgagatgtgttctaacactctaagagaagacatacnnnnnnnncttcattcagatagagagcactctccag |
229 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||| |||||| ||||||||||||||||| || |
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| T |
24994953 |
cttcgatcttttgattgccgggaagtcactgagatgtcttctgacactctaagagaagac-----gctgctttttcatttagatagagagcactctcaag |
24995047 |
T |
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| Q |
230 |
ttttatgatatctgagttcttgattagaagtacatataaatataaatatg--taataaagtttgtgaacagttattacacagcattatcttactgtgaag |
327 |
Q |
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| T |
24995048 |
tattatgatatctgaattctttactagaagtatatctaaatataaatatgtataatagtgttcttgaacagtacttacgcggcattatcttactgtgaag |
24995147 |
T |
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