View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_28 (Length: 490)
Name: NF1376_high_28
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 135 - 416
Target Start/End: Complemental strand, 7325480 - 7325199
Alignment:
| Q |
135 |
caaaaacccaaaagatttagttttagaagtttgtttctgttttctatgaatttccttttaaatcagttgtgatctcgagaagtacaaaaatttattttga |
234 |
Q |
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| T |
7325480 |
caaaaacccaaaagatttagttttagaagtttgtttctgttttctatgaatttccttttaaatcagttgtgatctcgagaagtacaaaaatttattttga |
7325381 |
T |
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| Q |
235 |
gaggcagaaccactgggtatttggtttttgcaactgtgggaagaaaagccataaatttctattcaaaaccacatcccagtacagaccaggcataacacag |
334 |
Q |
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| T |
7325380 |
gaggcagaaccactgggtatttggtttttgcaattgtgggaagaaaagccataaatttctattcagaaccacatcccactacggatgaggcataacacag |
7325281 |
T |
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| Q |
335 |
tttcccttgtgaaagtgggtgaattccaagcaaaatacccatgaaagatataattttcatgttgatgaaagcgcctctgacc |
416 |
Q |
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| T |
7325280 |
tttcccttatgaaagtgggtgaattccaagcaaaatacccatgaaagatataattttcatgttgatgaaagcgcctctgacc |
7325199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 42
Target Start/End: Original strand, 3789815 - 3789846
Alignment:
| Q |
11 |
cataggtatatcaggggagatttgaatttctt |
42 |
Q |
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| T |
3789815 |
cataggtatatcaggggagatttgaatttctt |
3789846 |
T |
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