View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_29 (Length: 483)
Name: NF1376_high_29
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 18982233 - 18981745
Alignment:
| Q |
1 |
tataattcgaacatacaaaaaatatcatttagccatgtcaggattttgtaacccggacattggcgagaaaagtagctaccaagggaagaggcagcggtcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18982233 |
tataattcgaacatacaaaaaatatcatttagccatgtcaggattttgtaacccggacattggcgagaaaagtagctaccaagggaagaggcagtggtcc |
18982134 |
T |
|
| Q |
101 |
aattccggtaccaaagctaaagaaga-gggagcacaatacaaactccaaaacaagctactaaagtggtatagataagacgcctcaattcaatgttttatg |
199 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |
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| T |
18982133 |
aattccggtaccaaagctaaagaagaggggagcacaatacaaactccaaaacaagctacttaagtggtatagataagaggcctcaattcaatgtttgatg |
18982034 |
T |
|
| Q |
200 |
aatcaacatgatataataaattgattttgtcacattaacactctaattaa-------------agtggaggtttaagttagaaaccaacaaaagaagata |
286 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18982033 |
aatcaacatgatataataaattgattttgtcaccttaacactctaattaaaattttattttagagtggaggtttaagttagaaaccaacaaaagaagata |
18981934 |
T |
|
| Q |
287 |
agaaaagattataaattcgtattgctttttgcctataataatgtaaaatcattaagataattgtaaat-aagtttatgcaataaattttttgaaggggtc |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18981933 |
agaaaagattataaattcgtattgcttttttcctataataatgtaaaatcattaagataattgtaaataaagtttatgcaataaattttttgaaggggtc |
18981834 |
T |
|
| Q |
386 |
taaaaaatttctcaaagaaagtcaatgtaaagttgttgacgnnnnnnnncttcatataaatcaaatttgactaaaggagacagtataat |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18981833 |
taaaaaatttctcaaagaaagtcaatgtaaagttgttgacgtttttttccttcatataaatcaaatttgactaaaggagacagtataat |
18981745 |
T |
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