View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_3 (Length: 941)
Name: NF1376_high_3
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 30 - 712
Target Start/End: Original strand, 41062680 - 41063360
Alignment:
| Q |
30 |
attaagaatgtcacgtttccttcgagtcttgtgtcaggtggagacattttcattaacattacaaatgtgaagtaatttgctctttgcatctcatcggtgg |
129 |
Q |
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| T |
41062680 |
attaagaatgtcacgtttccttcgagtcttgtgtcaggtggagacattttgattaacattacaaatgtgaagtaatttgctctttgcatctcatcggtgg |
41062779 |
T |
|
| Q |
130 |
ctgcaagaaggtcccttgcatgatcttctattgagacaattggtgaaataaattccaccaggatgaatacaacaaataataagctcataattttcatgac |
229 |
Q |
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| T |
41062780 |
ctgcaagaaggtcccttgcatgatcttctattgagacaattggtgaaataaattccaccaggatgaatacaacaaataataagctcataattttcatgac |
41062879 |
T |
|
| Q |
230 |
tcagttttttctgcaagttgtttgatttctcttctcctatataggttggttttatcatgcaaatgttattaaggattttgataattacaacaagaaagtg |
329 |
Q |
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| T |
41062880 |
tcagttttttctgcaagttgtttgatttctcttctcctggataggttggttttatcatgcaaatgttattaaggattttgataattacaacaagaaggtg |
41062979 |
T |
|
| Q |
330 |
ttattttggtgagaacatgcaaatgtggttctttaccaactatgcc--cacacttcacgaatgattaataaactaacaccaacttgaggtaattcattcc |
427 |
Q |
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| T |
41062980 |
ttattttcgtgagaacatgcaaatgtggttctttaccaactatgcctacacacttcacgaatgattaataaactaacaccaacttgaggtaattcattcc |
41063079 |
T |
|
| Q |
428 |
tactagcttaaaaattatacgcacatatacatctaatccattgtaannnnnnnnnnnnnngagagggtccattgtaannnnnnnnaagaggctccaatgt |
527 |
Q |
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| T |
41063080 |
tactagcttaaaaattatacgcacatatacatccaatccattgtaa----ttttttttttgagagggtccattgtaattttttttaagagggtccaatgt |
41063175 |
T |
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| Q |
528 |
aaatatgttgttgaaaagaaaaaggattgaaaataatatgcgattatattggttctttttatgatttaaattgtgggttggattggatcgagtgaccata |
627 |
Q |
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| T |
41063176 |
aaacatgttgttgaagagaaaaaggattgaaaataatatacgattacattggttctttttatgatttaaattgtgggttggattggatcgagtgaccata |
41063275 |
T |
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| Q |
628 |
tcacttagattcacaaacattcgtaaattcgttgatcggccaactcgttgagggggtgaaatgtgatgatagtctcaagccacct |
712 |
Q |
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| T |
41063276 |
tcacttagattcacaaacactcgtaaattcgttgatcggccaactcgttgagggggtgaaatgtgatgatagtctcaagccacct |
41063360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 707 - 932
Target Start/End: Original strand, 41066904 - 41067129
Alignment:
| Q |
707 |
ccacctacacaaattgatattcttcattttagatggtctttttgcaagggcaaacaaaaatggctgatgtgtaactcttgaaatagttatgatataaaaa |
806 |
Q |
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| T |
41066904 |
ccacctacacaaattgaagttcctcattttagatggtctttttgcaagggcaaacaaaaatggctgatgtgtaactcttgaaatagttatgatataaaaa |
41067003 |
T |
|
| Q |
807 |
tcaaactgtaaagatcgtaagaccttaatagaggacaaaactctatttaatactaatgcattattagtatatgatttgaactttagacctcttgtttaat |
906 |
Q |
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| T |
41067004 |
tcaaactgtaaagaccgtaagaccttaatagaggacaaaactctatttaataccgatgcattattagtatttgatttgaactttagacctcttgttaaat |
41067103 |
T |
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| Q |
907 |
tggaagagattctttaccatattatt |
932 |
Q |
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|||||||||||||||||||| ||||| |
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| T |
41067104 |
tggaagagattctttaccattttatt |
41067129 |
T |
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