View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_30 (Length: 482)
Name: NF1376_high_30
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 32 - 453
Target Start/End: Complemental strand, 182578 - 182161
Alignment:
| Q |
32 |
acgaaactcactttcttcaactcttgaacaaatgtactctcaatctcatcat---tctttcttatcaatggtgttgtcacctccttactcatctctctag |
128 |
Q |
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| T |
182578 |
acgaaactcactttcttcaactcttgaacaaatgtactctcaatctcatgatcactctttcttatcaatggtgttgtcacctccttactcatctctctag |
182479 |
T |
|
| Q |
129 |
agttgtttttcattaaatgtgatcactatgaatatgatatcagagatttatatataggagtgaaagagttttttctttcttcttctacctatatggaaag |
228 |
Q |
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| T |
182478 |
agttgtttttcattaaatgtgatcactatgaatatgatatcagagatttatatataggagtgaaagagttgtttctttcttcttctacctatatggaaag |
182379 |
T |
|
| Q |
229 |
taagtgtggttaatgttaatatttatggtcaaaaaccaagttgcatattatattaataataataaatttaaaattgtgcttctgcacacagaatgagaat |
328 |
Q |
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| T |
182378 |
taagtgtggttaatgttaatatttatggtcaaaaaccaagttgcatat--------taataataaatttaaaattgtgcttctgcacacagaatgaggat |
182287 |
T |
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| Q |
329 |
gacagaattgaagagtgtgttgtttgttagttagttgtaatattcaattaatcacgtaccattaaatcattgttctcgacatcaatcata-tttgtacac |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |
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| T |
182286 |
gacagaattgaagagtgtgttgtttgttagttagttgtaatattcaattaatcacgtaccattaaatcattgttgtcgacatcaatgatattttgtacac |
182187 |
T |
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| Q |
428 |
ttcatatttttcaatattcaatcaac |
453 |
Q |
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|||||||||||||||||||||||||| |
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| T |
182186 |
ttcatatttttcaatattcaatcaac |
182161 |
T |
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