View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_37 (Length: 440)
Name: NF1376_high_37
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 294 - 431
Target Start/End: Original strand, 51415680 - 51415817
Alignment:
| Q |
294 |
tgttggtgcctaaggaattcaattagccatctaaattgaaaacggtaaatacgaaatttgaaatgcaacaacacgctcttttaaacccatttgggacgtt |
393 |
Q |
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| T |
51415680 |
tgttggtgcctaaggaattcaattagccatctaaattgaaaacggtaaatatgaaatttgaaatgcaacaacacactcttttaaacccatttgagttgtt |
51415779 |
T |
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| Q |
394 |
tagatgtgttggtttgagactttagaatgcgttcatct |
431 |
Q |
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| T |
51415780 |
tagatatgttggtttgggattttagaatgtgttcatct |
51415817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 51415565 - 51415667
Alignment:
| Q |
168 |
gaaactataagggggcctttggccatccaaattaaacatgaattttatattagatataaccgagatgaaaaatctcaaaccattggattcaattttttta |
267 |
Q |
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| T |
51415565 |
gaaactataagggagcctttggccatccaaattaaacataaattttatattagatataaccgagatgaaaaatctcaaaccattggattcaattttttta |
51415664 |
T |
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| Q |
268 |
tgt |
270 |
Q |
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||| |
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| T |
51415665 |
tgt |
51415667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 51415425 - 51415516
Alignment:
| Q |
29 |
aagagcttcataagtgatttgaagaaagtttccaatcaaacagagtgagtaatcaatcataagagaaactttttatacgaattaaatataga |
120 |
Q |
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| T |
51415425 |
aagagcttcataagtgatttgaagaaagtttccaatcaaacagagtgagtaatcaatcataagagaaattttttatacgaattaaatataga |
51415516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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