View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_4 (Length: 833)
Name: NF1376_high_4
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 120 - 636
Target Start/End: Original strand, 21830609 - 21831125
Alignment:
| Q |
120 |
tgaattatctttaacagaatttgaccaaagatgagtttcttgattgttgtttttgttctcgaattttttcgtgatggcgcggctaataacaatgctagtg |
219 |
Q |
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| T |
21830609 |
tgaattatctttaacagaatttgaccaaagatgagtttcttgattgttgtttttgttctcgaattttttcgtgatggcgcggctaataacaatgctagta |
21830708 |
T |
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| Q |
220 |
gctttaagattctctttattttcatctaatcccatacttccaagcaatcttcgtcttctttccgtgatggatcccggagcagccatccatatatcatagt |
319 |
Q |
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| T |
21830709 |
gctttaagattctctttattttcatccaatcccatacttccaagcaatcttcgtcttctttctgtgatagatcccggagcagccatccatatatcatagt |
21830808 |
T |
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| Q |
320 |
taggagcaatgccggtagccgggggaagctccggcttccggtgtttggcagggtgaaatgaggagactgcagaggcaaaggataaccggctattttcata |
419 |
Q |
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| T |
21830809 |
ttggagcaatgccggtagccgggggaagctccggcttccggtgtttggaagggtgaaaggaggagactgcagaggcaaaggataaccggctatcttcata |
21830908 |
T |
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| Q |
420 |
atcatcatcttcatcagaagaagaagctaagtcatcggggacggcggtggagagacggttatatgtttcaaagaaatgtaagtcgtcctcgtcgtcgccg |
519 |
Q |
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| T |
21830909 |
atcatcatcttcatcagaagaagaagctaagtcatcggggacggcggtggagagacggttatatgtttcaaagaaatgtaagtcgtcctcgtcgtcgccg |
21831008 |
T |
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| Q |
520 |
aggccgtcccaattcatggtcagcgtctttcggcgttccatggtggccatcggcggcaggaggttttggaaatggaatggaaaacgctatgacaaatatg |
619 |
Q |
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| T |
21831009 |
aggccgtcccaattcatggtcagcgtttttctgcgttccatggtggccatcggcggcaggaggttttggaaatggaatggaaaacgctatgacaaatatg |
21831108 |
T |
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| Q |
620 |
aaatgtaatggaaaacg |
636 |
Q |
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| T |
21831109 |
aaatgtaatggaaaacg |
21831125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 21830501 - 21830571
Alignment:
| Q |
30 |
atatgaagaatgcgaatgatctgatttttgttgaggggaaccagatgaagttgtagtatttgcagaaacca |
100 |
Q |
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| T |
21830501 |
atatgaagaatgcgaatgatctgatttttgttgaggggaaccagatgaagttgtaatatttgcagaaacca |
21830571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 747 - 828
Target Start/End: Original strand, 21831237 - 21831319
Alignment:
| Q |
747 |
gtgttgtgttt-ggtagagaagtggaagagaggaaattgagggaagaaggagaggtcggttacggttatggatattgttggag |
828 |
Q |
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| T |
21831237 |
gtgttgtgttttggtagagaagtggaagagaggaaattgagggaagaaggagaggtcggttacagttatggatttttttggag |
21831319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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