View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_41 (Length: 428)
Name: NF1376_high_41
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 7 - 400
Target Start/End: Original strand, 18982224 - 18982615
Alignment:
| Q |
7 |
tcgaataatataatccagagagacacgtagctacttagttgaaccaagcatatactttcatcaagagcctcaattctcttgattccacaagcatataatt |
106 |
Q |
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| T |
18982224 |
tcgaattatataatccagagagtcacgtagctacttagttgaaccaagcatatactttcatcaagagcctcaattctcttgattccacaagcatatgatt |
18982323 |
T |
|
| Q |
107 |
tcttcaagaatcatttggtagatgatccaatgatcttaatggaaccacatgtactccacggttgaagaaaaaccttaattttgttcaatcacaaatgcaa |
206 |
Q |
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| T |
18982324 |
tcttcaagaatcatttggtagatgatccaatgatcttaatggaatca--tgtactccacggttgaagaaaaaccttaattttgttcaatcacaaatgcaa |
18982421 |
T |
|
| Q |
207 |
tatttcactttatgataatattcttgaagaaatacttaaattctgagaataataaaagtccaactatccctgaatcttgatcatgaataagagataattc |
306 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18982422 |
tatttcactttatgataatatacttgaagaaatacttaaattctgagaataataaaagtccaactatccctgaatcttgatcatgaataagagataattc |
18982521 |
T |
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| Q |
307 |
ctcaacctaaaaagtcacaaaatttaaagg-nnnnnnnnntccgataaataacacccttcatcattctcctccactcaagaaataggtgaaaact |
400 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18982522 |
ctcaacctaaaaagtcacaaaatttaaaggaaaaaaaaaatccgataaa-cacacccttcatcattctcctccactcaagaaataggtgaaaact |
18982615 |
T |
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