View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376_high_45 (Length: 411)
Name: NF1376_high_45
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 310 - 401
Target Start/End: Original strand, 42451119 - 42451210
Alignment:
| Q |
310 |
aaacatgtgagtgtgaccaaatgttgtgctcaaatagtgtggccatccaagacttactaacatttatttgatgaaagaatgtgccagaataa |
401 |
Q |
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| T |
42451119 |
aaacatgtgagtgtgactaaatgttgtgctcaaatagtgtggccatccaagacttactaacatttatttgatgaaagaatgtgccagtataa |
42451210 |
T |
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Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 42450868 - 42450964
Alignment:
| Q |
54 |
tttggacaaaacgctcgggcactcacacacaaaaacaggccgtccaataatcctcaaaagtaagtgaagtttaagcaaattttgatatatgagattt |
150 |
Q |
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| T |
42450868 |
tttggataaaacgctcgggcacccacgtacaaaaacaggccgtccaataatcctcaaaagtaagtgaagtctaagcaaattttaatatatgagattt |
42450964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 42451027 - 42451079
Alignment:
| Q |
218 |
gaggcctaaagcgagggttttggtagccttacttttagagcggccccgctaca |
270 |
Q |
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| T |
42451027 |
gaggcttaaagcgagggttttggtagccttactcttagagcggccccgctaca |
42451079 |
T |
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